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The map label for this gene is 86605013

Identifier: 86605013

GI number: 86605013

Start: 298516

End: 298947

Strand: Reverse

Name: 86605013

Synonym: CYA_0292

Alternate gene names: NA

Gene position: 298947-298516 (Counterclockwise)

Preceding gene: 86605014

Following gene: 86605012

Centisome position: 10.19

GC content: 60.19

Gene sequence:

>432_bases
GTGAGCGATCTCCTGTCCGATCCCACTTCTGCAAGCTTCTCTTTGGCTGAGATCGGTCGCCTGTCGCCTGCAGCCCTGGC
CTACCTGGGAGATGCCATTTACGAACTGCACGTGCGACGGCAGCAGTTGTTTCCTCCCACTCGGCCAGAGCTTTACCATC
GGCAGGTGGTAAGGCGGGTACGCGGATCTGCTCAGGCCAGATTGTTGTTGGCGCTTTTGCCCTATCTCAGCCCTGAAGAG
CGGGAGATCGTCCGCTGGGGCCGCAACGGCTGCGGTCGTCCACCCCGCCACTTGCCCTTGGCCGACTACCAGAATGCCAG
TGGCCTGGAAACCATCTTGGGCTACCTTTACCTCACCGATCCCGAGCGGCTACGCCACATTCTCGCTCTCACCGATGTTT
TGGCCAAGACGATAGGCGAGGGGGAAGGTTAA

Upstream 100 bases:

>100_bases
CATAGACTGAGCCAGCCAGTGGAGTCTCGAATTTGCTATGAACCGACGGCAGCGGTTCTAGGCATTTTTCCAAATAGCCA
AATAGTTTTTGTAAGCTGTC

Downstream 100 bases:

>100_bases
GATCGGCTTTTACTCTGCACCGTTCTCTGCCCATGCCCAAGCCTTCCCAATGCAAACCTCCCTTACGGCTGTCTCGCCGG
AGCAAGCTGCAGCGGCAAGG

Product: RNase3 domain-containing protein

Products: NA

Alternate protein names: URF4 [H]

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MSDLLSDPTSASFSLAEIGRLSPAALAYLGDAIYELHVRRQQLFPPTRPELYHRQVVRRVRGSAQARLLLALLPYLSPEE
REIVRWGRNGCGRPPRHLPLADYQNASGLETILGYLYLTDPERLRHILALTDVLAKTIGEGEG

Sequences:

>Translated_143_residues
MSDLLSDPTSASFSLAEIGRLSPAALAYLGDAIYELHVRRQQLFPPTRPELYHRQVVRRVRGSAQARLLLALLPYLSPEE
REIVRWGRNGCGRPPRHLPLADYQNASGLETILGYLYLTDPERLRHILALTDVLAKTIGEGEG
>Mature_142_residues
SDLLSDPTSASFSLAEIGRLSPAALAYLGDAIYELHVRRQQLFPPTRPELYHRQVVRRVRGSAQARLLLALLPYLSPEER
EIVRWGRNGCGRPPRHLPLADYQNASGLETILGYLYLTDPERLRHILALTDVLAKTIGEGEG

Specific function: Unknown

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16015; Mature: 15883

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLLSDPTSASFSLAEIGRLSPAALAYLGDAIYELHVRRQQLFPPTRPELYHRQVVRRV
CCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RGSAQARLLLALLPYLSPEEREIVRWGRNGCGRPPRHLPLADYQNASGLETILGYLYLTD
HCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
PERLRHILALTDVLAKTIGEGEG
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLLSDPTSASFSLAEIGRLSPAALAYLGDAIYELHVRRQQLFPPTRPELYHRQVVRRV
CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RGSAQARLLLALLPYLSPEEREIVRWGRNGCGRPPRHLPLADYQNASGLETILGYLYLTD
HCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
PERLRHILALTDVLAKTIGEGEG
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8363578 [H]