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The map label for this gene is sigK [H]

Identifier: 86604793

GI number: 86604793

Start: 59792

End: 60373

Strand: Reverse

Name: sigK [H]

Synonym: CYA_0061

Alternate gene names: 86604793

Gene position: 60373-59792 (Counterclockwise)

Preceding gene: 86604794

Following gene: 86604792

Centisome position: 2.06

GC content: 58.08

Gene sequence:

>582_bases
ATGAAGATCGAGGATGACAAAGCCGAGGGATCTCTGCAGGAGAGAAGCGATGCAGAGGTATTTTCAGCCCTCAAGGCAGG
CCAGTCGCAAGCTTTGGCTATCCTCTACGACCGCCACGCCGGTTTGGTATACGGAATCGCCTGCAAGATGCTGGGCAACT
CTGCCGAGGCCGAAGATCTGACGCAGGACATTTTTTTGAGTTTGGCCCGTTCTTCCTTCGATCCCAAGCGGGGATCCCTG
CGCACTTACCTGGGCATTTTGGCCCGCTCCCGCTGTTTGGATCGGCTGCGCTCTTGGCGCAATCGACAGCGATCCCTGGA
ACGGGGCAGAGTGGAATTACAGGGCGATGCCGCCGAGGATCCGGCCCTGGAGCAGTTGGCCGGGGCAGAGCAGGCGGTCG
AGGTGCAAACGGCTTTGGCCCAGCTATCTGAACATCAACGCCAAATCCTCAAAATGGCCTATTACGAAGGCATGAGCCAA
ACAGAAATTGCCAAGCAATTGAATCTGCCTTTGGGAACGGTTAAAGCCAGAGCCCGCCGAGGCTTGCTGCGGCTGCGCGA
GTTGCTGGGAGGCGCCCCATGA

Upstream 100 bases:

>100_bases
GATAGATTATGGGAGCCGCTGTCCTTTCTGGCTTGCCTTAGGCAAGGCCTGCTTCTTACTAAGTGCTTTCTCGTCGCCGT
TTTGTTTTCTCCTTCCCCCC

Downstream 100 bases:

>100_bases
AAGCCGAGTCTGTGTCTCCCGAAGAACTGCAACTGTGGCTGGCCGGCTACGTGCTGGGGGATCTCTCCCCGGAAGAGGCC
GACCGCCTGGAAGCGGTGCT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKIEDDKAEGSLQERSDAEVFSALKAGQSQALAILYDRHAGLVYGIACKMLGNSAEAEDLTQDIFLSLARSSFDPKRGSL
RTYLGILARSRCLDRLRSWRNRQRSLERGRVELQGDAAEDPALEQLAGAEQAVEVQTALAQLSEHQRQILKMAYYEGMSQ
TEIAKQLNLPLGTVKARARRGLLRLRELLGGAP

Sequences:

>Translated_193_residues
MKIEDDKAEGSLQERSDAEVFSALKAGQSQALAILYDRHAGLVYGIACKMLGNSAEAEDLTQDIFLSLARSSFDPKRGSL
RTYLGILARSRCLDRLRSWRNRQRSLERGRVELQGDAAEDPALEQLAGAEQAVEVQTALAQLSEHQRQILKMAYYEGMSQ
TEIAKQLNLPLGTVKARARRGLLRLRELLGGAP
>Mature_193_residues
MKIEDDKAEGSLQERSDAEVFSALKAGQSQALAILYDRHAGLVYGIACKMLGNSAEAEDLTQDIFLSLARSSFDPKRGSL
RTYLGILARSRCLDRLRSWRNRQRSLERGRVELQGDAAEDPALEQLAGAEQAVEVQTALAQLSEHQRQILKMAYYEGMSQ
TEIAKQLNLPLGTVKARARRGLLRLRELLGGAP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21384; Mature: 21384

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIEDDKAEGSLQERSDAEVFSALKAGQSQALAILYDRHAGLVYGIACKMLGNSAEAEDL
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCHHHHHHHHHHCCCCCHHHH
TQDIFLSLARSSFDPKRGSLRTYLGILARSRCLDRLRSWRNRQRSLERGRVELQGDAAED
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
PALEQLAGAEQAVEVQTALAQLSEHQRQILKMAYYEGMSQTEIAKQLNLPLGTVKARARR
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
GLLRLRELLGGAP
HHHHHHHHHCCCC
>Mature Secondary Structure
MKIEDDKAEGSLQERSDAEVFSALKAGQSQALAILYDRHAGLVYGIACKMLGNSAEAEDL
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHEECCCCCHHHHHHHHHHCCCCCHHHH
TQDIFLSLARSSFDPKRGSLRTYLGILARSRCLDRLRSWRNRQRSLERGRVELQGDAAED
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
PALEQLAGAEQAVEVQTALAQLSEHQRQILKMAYYEGMSQTEIAKQLNLPLGTVKARARR
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
GLLRLRELLGGAP
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA