Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

Click here to switch to the map view.

The map label for this gene is 86604792

Identifier: 86604792

GI number: 86604792

Start: 59052

End: 59795

Strand: Reverse

Name: 86604792

Synonym: CYA_0060

Alternate gene names: NA

Gene position: 59795-59052 (Counterclockwise)

Preceding gene: 86604793

Following gene: 86604791

Centisome position: 2.04

GC content: 64.25

Gene sequence:

>744_bases
ATGAAAGCCGAGTCTGTGTCTCCCGAAGAACTGCAACTGTGGCTGGCCGGCTACGTGCTGGGGGATCTCTCCCCGGAAGA
GGCCGACCGCCTGGAAGCGGTGCTCAAGCTGCGCCCGGAGCTGCAGCAGGAGCTGCAAGCCCTGCAACAGACCCTGGAAA
GGGCCTACGGCGTCGAAGAGAAGCAACCTCCCCCCGCGCTGCGGGCTTCTCTGCTGCAAGCCTACACAGAGCCGGCGCCC
AAACCCCTCTCCACGACAATTCAGGGATCCCCTCGCTGGCGGGGCCTGGCGGCATTGGCAGCAGGGTTAATCGTGGCTTT
GGGACTGGGGAATCTCTACCTGTGGCGCAGGCTGCAACTGGCCCAGACGCAAGGGATCCCGGTCGAGGTGGTGACATATG
AATTGCAACCGACGGCAGAAAACGTGACTGGCTCGGTTACGGTGGAGGTGGATCCGCAGCGCTTGCAGGGGAGGCTGGTA
GCCCGCGGTTTGCCGCCGCTGCCGGAAGGCCGCGTCTATGCGCTCTGGGTGGTGCTGGAGCCGGAAGCGCCCTTCACCAA
AGATAGGGCGGGGGCGATCCTCACCACAGCTTTCCGGGTGGATGCGGCGGGAAACCAAGAACAGGAGCTGCGCTTGCCAC
CGGTGTTCGCATCCACAGAATGGGTGCGGGCAGTGGCCATTACCGAAGAAGACGGCAGCCGGCCCCAAGAGCACCAGGGA
TCCCCTCTGTGGATTTCCGGCTAG

Upstream 100 bases:

>100_bases
AAACAGAAATTGCCAAGCAATTGAATCTGCCTTTGGGAACGGTTAAAGCCAGAGCCCGCCGAGGCTTGCTGCGGCTGCGC
GAGTTGCTGGGAGGCGCCCC

Downstream 100 bases:

>100_bases
CGGGAGCAGTGGCCAACCAACATAGGTTCGTCGGCGGAGGCAAGGCATGGATCTAGCCAGGATCCCTCTGCTTAAGCGAC
TGGCGGAGCACTCTCGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKAESVSPEELQLWLAGYVLGDLSPEEADRLEAVLKLRPELQQELQALQQTLERAYGVEEKQPPPALRASLLQAYTEPAP
KPLSTTIQGSPRWRGLAALAAGLIVALGLGNLYLWRRLQLAQTQGIPVEVVTYELQPTAENVTGSVTVEVDPQRLQGRLV
ARGLPPLPEGRVYALWVVLEPEAPFTKDRAGAILTTAFRVDAAGNQEQELRLPPVFASTEWVRAVAITEEDGSRPQEHQG
SPLWISG

Sequences:

>Translated_247_residues
MKAESVSPEELQLWLAGYVLGDLSPEEADRLEAVLKLRPELQQELQALQQTLERAYGVEEKQPPPALRASLLQAYTEPAP
KPLSTTIQGSPRWRGLAALAAGLIVALGLGNLYLWRRLQLAQTQGIPVEVVTYELQPTAENVTGSVTVEVDPQRLQGRLV
ARGLPPLPEGRVYALWVVLEPEAPFTKDRAGAILTTAFRVDAAGNQEQELRLPPVFASTEWVRAVAITEEDGSRPQEHQG
SPLWISG
>Mature_247_residues
MKAESVSPEELQLWLAGYVLGDLSPEEADRLEAVLKLRPELQQELQALQQTLERAYGVEEKQPPPALRASLLQAYTEPAP
KPLSTTIQGSPRWRGLAALAAGLIVALGLGNLYLWRRLQLAQTQGIPVEVVTYELQPTAENVTGSVTVEVDPQRLQGRLV
ARGLPPLPEGRVYALWVVLEPEAPFTKDRAGAILTTAFRVDAAGNQEQELRLPPVFASTEWVRAVAITEEDGSRPQEHQG
SPLWISG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27078; Mature: 27078

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAESVSPEELQLWLAGYVLGDLSPEEADRLEAVLKLRPELQQELQALQQTLERAYGVEE
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC
KQPPPALRASLLQAYTEPAPKPLSTTIQGSPRWRGLAALAAGLIVALGLGNLYLWRRLQL
CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AQTQGIPVEVVTYELQPTAENVTGSVTVEVDPQRLQGRLVARGLPPLPEGRVYALWVVLE
HHCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHHCCCHHCCCCCCCCCCCEEEEEEEEC
PEAPFTKDRAGAILTTAFRVDAAGNQEQELRLPPVFASTEWVRAVAITEEDGSRPQEHQG
CCCCCCCCCCCEEEEEEEEEECCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCHHHCC
SPLWISG
CCEEECC
>Mature Secondary Structure
MKAESVSPEELQLWLAGYVLGDLSPEEADRLEAVLKLRPELQQELQALQQTLERAYGVEE
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCC
KQPPPALRASLLQAYTEPAPKPLSTTIQGSPRWRGLAALAAGLIVALGLGNLYLWRRLQL
CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AQTQGIPVEVVTYELQPTAENVTGSVTVEVDPQRLQGRLVARGLPPLPEGRVYALWVVLE
HHCCCCCEEEEEEEECCCCCCCCEEEEEEECHHHHCCCHHCCCCCCCCCCCEEEEEEEEC
PEAPFTKDRAGAILTTAFRVDAAGNQEQELRLPPVFASTEWVRAVAITEEDGSRPQEHQG
CCCCCCCCCCCEEEEEEEEEECCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCHHHCC
SPLWISG
CCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA