Definition Synechococcus sp. JA-3-3Ab, complete genome.
Accession NC_007775
Length 2,932,766

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The map label for this gene is 86604771

Identifier: 86604771

GI number: 86604771

Start: 35581

End: 37047

Strand: Reverse

Name: 86604771

Synonym: CYA_0039

Alternate gene names: NA

Gene position: 37047-35581 (Counterclockwise)

Preceding gene: 86604773

Following gene: 86604763

Centisome position: 1.26

GC content: 62.78

Gene sequence:

>1467_bases
ATGGCTGACGCAGTCCCAGTTCGGCGCTACGACCTGTTTGTGCAAGCCTCGCGGCTGCTGCAGCGTTACCGGCAGTTGAC
GCCGGAACTGCGTCCAATAGGAGTAGAAGTGGCCCTGGCCATCCAGTACCATCGCGCCCAGGCCGGCTCGGGATCTCTTC
TGCCGGCGGTGGGATCCCCTCATGGCCTGCCTCTGCAGCAGGTGGCCCAGCGCATTTGCGACCCGTTTTACAGCAAAGTC
CACCCCCTGCTGCCCACCCTGCCGGAGACGGGGGAGCCCTTGGTGTGGCCCCTGTTTAACCAAGGGGAAAACGGCCTTGT
CCAACCCCTGGCGCCGAGCAAAGTGGGCGGCAAATTGGCGGAACGGCGCTGGCTTAAGGCTTGCAACAGCCAGGAGGGCA
TTGGTTGTCATGCTTTGGCCGCCCATCTGTGGCAGGACGAGCGTTTTCTGGCCGAAGACCGGGATCTCTGTCCTTTTCGC
CTCTACGACGGGCGCTACCCCTTGAGCGTGGATCAGGGGCGGCAAACCTGTGGCTTCGACGACCACCCCTGTGGCTGGCA
GGCGGGACACCCCAAAATGCTGCAGGTGGTGGGCAAGGGCAAACAGGCGGAGATTTTGCTCCCCCACTGGACTGACGCGA
TGTGGGCCATGCTGATCCCGCCCCATCGCCCCCTGCCCATCTATCCTCTGCTGGTGATGCTCTACTTTGGCCAGGAGACT
CTGCAAAAGGGGCGCAGCAGCCTTTCGGTGGAGCAGTTTCGCCTGGATTTTCAGTTCAGCCACTCCCAACTCAAGCTGTT
GTTTGACACCCACCCTGAGCACCCTCTCAATCGCCATCTGCTCGCCCTGGCTGCGCAGCCGGAGGTGGAGTGGGGATCCG
CCGAGCTCCTGCCTCCTATGCCCCCCCTCTTGCATCACCCTGCTGGGGGCAAGGTGGTTTTGGATCCGGATGAGCCGCCC
CAGTTTCGCAGCAGCGGGATCCCTGCCTGTGCCGGGACAGACCCGCTGATGGCAGAGCGCCGCCGTCGCCGTCAGTTGGA
GCGCAGCGAACGCCACAACGAGATCTTGCACCACTTTCGCCGCTGGTTCCGCCTGGCTGGGCTGGAGGTGCGGGAAGACC
AGCACACGTTTGACTTTCTGGCGGTGGCGGATGGACACCTGCTTTTGGCCGAGGTGAAATTGCTGCACCACAAAGATGCC
GCAGAGGCGCTCCAGGAGGTGGTGGGGCAATTATTTTACTACGAGCGCTTTGCCCTCACCCCCTGGATCGAACAGGGCTT
CTCCGTTCAGAAAGCCGCCGTTTTCGACGGGCCGCCGCCGGATCCCTACATTCGATTTCTGGAAGACCTGGGCATTGCCA
CCTACTGGATCAACGAGCAGCAGATGATCGACGGGCCGGAGAGCTCGCTGCGCCTGTTGCGCCAAATGGAGGTGCGGGTG
CGGCCGGATCCGGAGTTGGGGGATTAG

Upstream 100 bases:

>100_bases
TGCAGACACAACAAACCCAATCTCGATCCTGTTTGAGACCGAGAAGCTCGTCCATAGCCAGCTTTTGCTCAAGTCGGCGA
GGAATTTCTCCGGCAACCCT

Downstream 100 bases:

>100_bases
CCTCTTTTCCGGGCTCTGGCCTAATGGAGAGGGATTCTTAACCACCTCTTTACTCAGGTTCTCCCCTGAGGGTGGTACAG
CCTGTTAAGGGCTCAAGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSPHGLPLQQVAQRICDPFYSKV
HPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFR
LYDGRYPLSVDQGRQTCGFDDHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET
LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPMPPLLHHPAGGKVVLDPDEPP
QFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDA
AEALQEVVGQLFYYERFALTPWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV
RPDPELGD

Sequences:

>Translated_488_residues
MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSPHGLPLQQVAQRICDPFYSKV
HPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFR
LYDGRYPLSVDQGRQTCGFDDHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET
LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPMPPLLHHPAGGKVVLDPDEPP
QFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDA
AEALQEVVGQLFYYERFALTPWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV
RPDPELGD
>Mature_487_residues
ADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSPHGLPLQQVAQRICDPFYSKVH
PLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRL
YDGRYPLSVDQGRQTCGFDDHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQETL
QKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPMPPLLHHPAGGKVVLDPDEPPQ
FRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAA
EALQEVVGQLFYYERFALTPWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRVR
PDPELGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55451; Mature: 55320

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSP
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCC
HGLPLQQVAQRICDPFYSKVHPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
ERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRLYDGRYPLSVDQGRQTCGFD
HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC
DHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET
CCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCHHH
LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPM
HHHHHHHCCHHHHEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
PPLLHHPAGGKVVLDPDEPPQFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFR
CHHHCCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAAEALQEVVGQLFYYERFALT
HHHHHCCCEEECCCCCEEEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
PWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV
HHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCHHHCCCCHHHHHHHHHHHHEE
RPDPELGD
CCCCCCCC
>Mature Secondary Structure 
ADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSP
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCC
HGLPLQQVAQRICDPFYSKVHPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
ERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRLYDGRYPLSVDQGRQTCGFD
HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC
DHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET
CCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCHHH
LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPM
HHHHHHHCCHHHHEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
PPLLHHPAGGKVVLDPDEPPQFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFR
CHHHCCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAAEALQEVVGQLFYYERFALT
HHHHHCCCEEECCCCCEEEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
PWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV
HHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCHHHCCCCHHHHHHHHHHHHEE
RPDPELGD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA