| Definition | Synechococcus sp. JA-3-3Ab, complete genome. |
|---|---|
| Accession | NC_007775 |
| Length | 2,932,766 |
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The map label for this gene is 86604771
Identifier: 86604771
GI number: 86604771
Start: 35581
End: 37047
Strand: Reverse
Name: 86604771
Synonym: CYA_0039
Alternate gene names: NA
Gene position: 37047-35581 (Counterclockwise)
Preceding gene: 86604773
Following gene: 86604763
Centisome position: 1.26
GC content: 62.78
Gene sequence:
>1467_bases ATGGCTGACGCAGTCCCAGTTCGGCGCTACGACCTGTTTGTGCAAGCCTCGCGGCTGCTGCAGCGTTACCGGCAGTTGAC GCCGGAACTGCGTCCAATAGGAGTAGAAGTGGCCCTGGCCATCCAGTACCATCGCGCCCAGGCCGGCTCGGGATCTCTTC TGCCGGCGGTGGGATCCCCTCATGGCCTGCCTCTGCAGCAGGTGGCCCAGCGCATTTGCGACCCGTTTTACAGCAAAGTC CACCCCCTGCTGCCCACCCTGCCGGAGACGGGGGAGCCCTTGGTGTGGCCCCTGTTTAACCAAGGGGAAAACGGCCTTGT CCAACCCCTGGCGCCGAGCAAAGTGGGCGGCAAATTGGCGGAACGGCGCTGGCTTAAGGCTTGCAACAGCCAGGAGGGCA TTGGTTGTCATGCTTTGGCCGCCCATCTGTGGCAGGACGAGCGTTTTCTGGCCGAAGACCGGGATCTCTGTCCTTTTCGC CTCTACGACGGGCGCTACCCCTTGAGCGTGGATCAGGGGCGGCAAACCTGTGGCTTCGACGACCACCCCTGTGGCTGGCA GGCGGGACACCCCAAAATGCTGCAGGTGGTGGGCAAGGGCAAACAGGCGGAGATTTTGCTCCCCCACTGGACTGACGCGA TGTGGGCCATGCTGATCCCGCCCCATCGCCCCCTGCCCATCTATCCTCTGCTGGTGATGCTCTACTTTGGCCAGGAGACT CTGCAAAAGGGGCGCAGCAGCCTTTCGGTGGAGCAGTTTCGCCTGGATTTTCAGTTCAGCCACTCCCAACTCAAGCTGTT GTTTGACACCCACCCTGAGCACCCTCTCAATCGCCATCTGCTCGCCCTGGCTGCGCAGCCGGAGGTGGAGTGGGGATCCG CCGAGCTCCTGCCTCCTATGCCCCCCCTCTTGCATCACCCTGCTGGGGGCAAGGTGGTTTTGGATCCGGATGAGCCGCCC CAGTTTCGCAGCAGCGGGATCCCTGCCTGTGCCGGGACAGACCCGCTGATGGCAGAGCGCCGCCGTCGCCGTCAGTTGGA GCGCAGCGAACGCCACAACGAGATCTTGCACCACTTTCGCCGCTGGTTCCGCCTGGCTGGGCTGGAGGTGCGGGAAGACC AGCACACGTTTGACTTTCTGGCGGTGGCGGATGGACACCTGCTTTTGGCCGAGGTGAAATTGCTGCACCACAAAGATGCC GCAGAGGCGCTCCAGGAGGTGGTGGGGCAATTATTTTACTACGAGCGCTTTGCCCTCACCCCCTGGATCGAACAGGGCTT CTCCGTTCAGAAAGCCGCCGTTTTCGACGGGCCGCCGCCGGATCCCTACATTCGATTTCTGGAAGACCTGGGCATTGCCA CCTACTGGATCAACGAGCAGCAGATGATCGACGGGCCGGAGAGCTCGCTGCGCCTGTTGCGCCAAATGGAGGTGCGGGTG CGGCCGGATCCGGAGTTGGGGGATTAG
Upstream 100 bases:
>100_bases TGCAGACACAACAAACCCAATCTCGATCCTGTTTGAGACCGAGAAGCTCGTCCATAGCCAGCTTTTGCTCAAGTCGGCGA GGAATTTCTCCGGCAACCCT
Downstream 100 bases:
>100_bases CCTCTTTTCCGGGCTCTGGCCTAATGGAGAGGGATTCTTAACCACCTCTTTACTCAGGTTCTCCCCTGAGGGTGGTACAG CCTGTTAAGGGCTCAAGGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSPHGLPLQQVAQRICDPFYSKV HPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFR LYDGRYPLSVDQGRQTCGFDDHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPMPPLLHHPAGGKVVLDPDEPP QFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDA AEALQEVVGQLFYYERFALTPWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV RPDPELGD
Sequences:
>Translated_488_residues MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSPHGLPLQQVAQRICDPFYSKV HPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFR LYDGRYPLSVDQGRQTCGFDDHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPMPPLLHHPAGGKVVLDPDEPP QFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDA AEALQEVVGQLFYYERFALTPWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV RPDPELGD >Mature_487_residues ADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSPHGLPLQQVAQRICDPFYSKVH PLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLAERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRL YDGRYPLSVDQGRQTCGFDDHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQETL QKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPMPPLLHHPAGGKVVLDPDEPPQ FRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFRRWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAA EALQEVVGQLFYYERFALTPWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRVR PDPELGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55451; Mature: 55320
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSP CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCC HGLPLQQVAQRICDPFYSKVHPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH ERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRLYDGRYPLSVDQGRQTCGFD HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC DHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET CCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCHHH LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPM HHHHHHHCCHHHHEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC PPLLHHPAGGKVVLDPDEPPQFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFR CHHHCCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAAEALQEVVGQLFYYERFALT HHHHHCCCEEECCCCCEEEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC PWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV HHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCHHHCCCCHHHHHHHHHHHHEE RPDPELGD CCCCCCCC >Mature Secondary Structure ADAVPVRRYDLFVQASRLLQRYRQLTPELRPIGVEVALAIQYHRAQAGSGSLLPAVGSP CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEHHCCCCCCCCCCCCCCC HGLPLQQVAQRICDPFYSKVHPLLPTLPETGEPLVWPLFNQGENGLVQPLAPSKVGGKLA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH ERRWLKACNSQEGIGCHALAAHLWQDERFLAEDRDLCPFRLYDGRYPLSVDQGRQTCGFD HHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC DHPCGWQAGHPKMLQVVGKGKQAEILLPHWTDAMWAMLIPPHRPLPIYPLLVMLYFGQET CCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHCCCCCCCCCHHHHHHHHHHCHHH LQKGRSSLSVEQFRLDFQFSHSQLKLLFDTHPEHPLNRHLLALAAQPEVEWGSAELLPPM HHHHHHHCCHHHHEEEEEECCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC PPLLHHPAGGKVVLDPDEPPQFRSSGIPACAGTDPLMAERRRRRQLERSERHNEILHHFR CHHHCCCCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RWFRLAGLEVREDQHTFDFLAVADGHLLLAEVKLLHHKDAAEALQEVVGQLFYYERFALT HHHHHCCCEEECCCCCEEEEEECCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC PWIEQGFSVQKAAVFDGPPPDPYIRFLEDLGIATYWINEQQMIDGPESSLRLLRQMEVRV HHHHCCCCEEEEEECCCCCCCHHHHHHHHCCEEEEEECCHHHCCCCHHHHHHHHHHHHEE RPDPELGD CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA