The gene/protein map for NC_007766 is currently unavailable.
Definition Rhizobium etli CFN 42 plasmid p42f, complete sequence.
Accession NC_007766
Length 642,517

Click here to switch to the map view.

The map label for this gene is yusZ [H]

Identifier: 86361196

GI number: 86361196

Start: 525920

End: 526669

Strand: Reverse

Name: yusZ [H]

Synonym: RHE_PF00466

Alternate gene names: 86361196

Gene position: 526669-525920 (Counterclockwise)

Preceding gene: 86361198

Following gene: 86361192

Centisome position: 81.97

GC content: 62.0

Gene sequence:

>750_bases
ATGAAGACCGTTCTCGTTACAGGATGCTCGTCGGGGTTCGGGCTGGAAATTGGCAGGTTCTTTCTCGCGCATGGCTGGAA
GGTGATCGCCACCATGCGAATGCCGCGCCAAGACCTTCTGCCGATCTCGGACCATCTCAAGATCGTTGCGCTTGATGTCA
CGAGCCCTGAAAGCATCCGCGCTGCTGTTGAGACCGCTGGTCCTGTGGATGTGCTGGTCAACAACGCCGGCATCGGTTGG
CTCAACGCCGTTGAGGGAACGCCAATGGAGATCGCTCGCGATGTTTTTGAGACGAACACTCTCGGAACGATCGCGATGAC
GCAAGCGGTTCTGCCGCAGATGCGGGAGCGGCAGGAGGGGGTCATCGTCAACGTCACGTCGAGCGTGACGCTCAAGTCGC
TCCCGCTCCTCTCGGTCTATACGGCCAGCAAAGCTGCGGTGAACGCGTTCACCGAGTCTGTCGCGCTCGAGCTCGAGCCC
TTCAATGTGCGCGTGAGGATCGTGCTCCCGGGGCGCGCGCCGGAGACTCGGTTCGGCGATACGGCGCGCTCACGGATTCA
ACAACAGGGCGGCTTCCCGGAGGCTTATTCGTCGGTCGTCGCAGACGTATTCGCTTCGTGGGAGCAGCAGTCGGCGACCG
CTCTGACACAGCCCGTCGACGTCGTCGAGGCAGTATGGCGCGCTGCGACCGATCCTTCGTGTCCGTTGCGCATCCCTGCA
GGCGTCGACGCCGAAGCATTGGCGGTATGA

Upstream 100 bases:

>100_bases
CTCATCGATACTCCTGATAATGAAACAAGGACGATGCATGATATTCAGTAGCGGCATCGCCGTCTACATCTATCGCTGTC
AGCAAGGATAGGAGACAGAT

Downstream 100 bases:

>100_bases
AGGCGGCGGCCCCTTAAGGTCGCCCGCGCAGAACGAACAGCAGCATCGGCGCCCCAACCAGGGCCGAGATCAAACCCGCA
GGGACCTGGTAGGGAAAGGC

Product: dehydrogenase protein

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MKTVLVTGCSSGFGLEIGRFFLAHGWKVIATMRMPRQDLLPISDHLKIVALDVTSPESIRAAVETAGPVDVLVNNAGIGW
LNAVEGTPMEIARDVFETNTLGTIAMTQAVLPQMRERQEGVIVNVTSSVTLKSLPLLSVYTASKAAVNAFTESVALELEP
FNVRVRIVLPGRAPETRFGDTARSRIQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSCPLRIPA
GVDAEALAV

Sequences:

>Translated_249_residues
MKTVLVTGCSSGFGLEIGRFFLAHGWKVIATMRMPRQDLLPISDHLKIVALDVTSPESIRAAVETAGPVDVLVNNAGIGW
LNAVEGTPMEIARDVFETNTLGTIAMTQAVLPQMRERQEGVIVNVTSSVTLKSLPLLSVYTASKAAVNAFTESVALELEP
FNVRVRIVLPGRAPETRFGDTARSRIQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSCPLRIPA
GVDAEALAV
>Mature_249_residues
MKTVLVTGCSSGFGLEIGRFFLAHGWKVIATMRMPRQDLLPISDHLKIVALDVTSPESIRAAVETAGPVDVLVNNAGIGW
LNAVEGTPMEIARDVFETNTLGTIAMTQAVLPQMRERQEGVIVNVTSSVTLKSLPLLSVYTASKAAVNAFTESVALELEP
FNVRVRIVLPGRAPETRFGDTARSRIQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSCPLRIPA
GVDAEALAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=252, Percent_Identity=34.5238095238095, Blast_Score=123, Evalue=2e-28,
Organism=Homo sapiens, GI20149619, Length=184, Percent_Identity=33.1521739130435, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI223718074, Length=182, Percent_Identity=36.8131868131868, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=34.5945945945946, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=34.5945945945946, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=34.5945945945946, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI19743808, Length=186, Percent_Identity=37.6344086021505, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI150247226, Length=273, Percent_Identity=32.6007326007326, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI119392083, Length=182, Percent_Identity=34.0659340659341, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI7706318, Length=184, Percent_Identity=34.2391304347826, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI10190704, Length=188, Percent_Identity=29.7872340425532, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI22507405, Length=276, Percent_Identity=29.3478260869565, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI40548397, Length=180, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI214010158, Length=180, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI214010156, Length=180, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI22758144, Length=180, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI157739938, Length=184, Percent_Identity=27.1739130434783, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=197, Percent_Identity=27.4111675126904, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI7705925, Length=172, Percent_Identity=32.5581395348837, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=30.2702702702703, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI7705855, Length=181, Percent_Identity=30.3867403314917, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI50726952, Length=191, Percent_Identity=32.9842931937173, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787820, Length=244, Percent_Identity=35.2459016393443, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=34.5945945945946, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787335, Length=178, Percent_Identity=34.8314606741573, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=31.7460317460317, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790717, Length=180, Percent_Identity=31.6666666666667, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786812, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=28.8770053475936, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=226, Percent_Identity=30.9734513274336, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=27.8884462151394, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=226, Percent_Identity=28.3185840707965, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=223, Percent_Identity=30.4932735426009, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=185, Percent_Identity=30.8108108108108, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=208, Percent_Identity=31.7307692307692, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=246, Percent_Identity=30.0813008130081, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=211, Percent_Identity=30.8056872037915, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17559962, Length=203, Percent_Identity=30.5418719211823, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=188, Percent_Identity=31.9148936170213, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=222, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=188, Percent_Identity=31.9148936170213, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=199, Percent_Identity=28.643216080402, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=177, Percent_Identity=32.7683615819209, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=244, Percent_Identity=27.4590163934426, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=198, Percent_Identity=29.7979797979798, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=186, Percent_Identity=30.1075268817204, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=189, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=186, Percent_Identity=30.1075268817204, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=196, Percent_Identity=29.5918367346939, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=186, Percent_Identity=31.1827956989247, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=247, Percent_Identity=27.1255060728745, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=35.2331606217617, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=249, Percent_Identity=28.1124497991968, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21358495, Length=187, Percent_Identity=32.0855614973262, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21357041, Length=207, Percent_Identity=33.8164251207729, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24643142, Length=172, Percent_Identity=32.5581395348837, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24651139, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI23397609, Length=178, Percent_Identity=34.8314606741573, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI28571526, Length=238, Percent_Identity=30.2521008403361, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24584744, Length=215, Percent_Identity=28.8372093023256, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574402, Length=215, Percent_Identity=28.8372093023256, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584748, Length=216, Percent_Identity=28.2407407407407, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161076933, Length=216, Percent_Identity=28.2407407407407, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24644339, Length=243, Percent_Identity=29.2181069958848, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24639444, Length=184, Percent_Identity=33.695652173913, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640442, Length=211, Percent_Identity=28.436018957346, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007236, Length=188, Percent_Identity=31.3829787234043, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=31.3186813186813, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=31.1320754716981, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24644337, Length=166, Percent_Identity=33.7349397590361, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26673; Mature: 26673

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MKTVLVTGCSSGFGLEIGRFFLAHGWKVIATMRMPRQDLLPISDHLKIVALDVTSPESIR
CCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCEEEEEEECCCCHHHH
AAVETAGPVDVLVNNAGIGWLNAVEGTPMEIARDVFETNTLGTIAMTQAVLPQMRERQEG
HHHHCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
VIVNVTSSVTLKSLPLLSVYTASKAAVNAFTESVALELEPFNVRVRIVLPGRAPETRFGD
EEEEEECCCEECCCCEEEEEHHHHHHHHHHHHHEEEEEECCEEEEEEEECCCCCCCCCCH
TARSRIQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSCPLRIPA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEECCC
GVDAEALAV
CCCHHHHCC
>Mature Secondary Structure
MKTVLVTGCSSGFGLEIGRFFLAHGWKVIATMRMPRQDLLPISDHLKIVALDVTSPESIR
CCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCHHHCCCCCCCEEEEEEECCCCHHHH
AAVETAGPVDVLVNNAGIGWLNAVEGTPMEIARDVFETNTLGTIAMTQAVLPQMRERQEG
HHHHCCCCEEEEEECCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
VIVNVTSSVTLKSLPLLSVYTASKAAVNAFTESVALELEPFNVRVRIVLPGRAPETRFGD
EEEEEECCCEECCCCEEEEEHHHHHHHHHHHHHEEEEEECCEEEEEEEECCCCCCCCCCH
TARSRIQQQGGFPEAYSSVVADVFASWEQQSATALTQPVDVVEAVWRAATDPSCPLRIPA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEECCC
GVDAEALAV
CCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]