Click here to switch to the map view.

The map label for this gene is rpoI

Identifier: 86361192

GI number: 86361192

Start: 521767

End: 522423

Strand: Reverse

Name: rpoI

Synonym: RHE_PF00462

Alternate gene names: NA

Gene position: 522423-521767 (Counterclockwise)

Preceding gene: 86361196

Following gene: 86361188

Centisome position: 81.31

GC content: 58.9

Gene sequence:

>657_bases
ATGCGAGCATCGCATCGTGATGTGAACGGAAATGCCGTGGTCAACGCCATGATCGAAAACAAGGACAAGCTCCTCAAAAC
GATTGAAAGCGTTATCAAATCAAGGTCATATTCTGAGGATATATTTCAGGATGGTGTCATCAAAGCTTATGGGGTCAATG
TCGAGGGCGTCCGTTGCCCGATCGGCTATGCCTTCCGGATGGTCTATAACCTCGCACTCGACGAGAGCCGCCGGCGCCGC
CAGCAGATGAACAACTATAGGTCGATCGACCAGGTTCAGGAAATGACGGCGCCCATTCCCACCGTGCTCGATCAACTGGT
CGCCGCCGAAACCCTGCGCGACGTGCTGGCCTCGCTCGAGGCGCTGCCGAAGCGCACCAACGACGCCTTCATCCGCCATC
GCCTGAACGGCGTGCCGCAGAAGGATATCGCGGCCGAGCTCGGCGTTTCCCGAACGCTCGTCAATTTCATGATCAAGGCG
GCGGAGCAGCATTGCCATCTGGCAATGACCGAGCCTGCCCGCCCCGATCACGAGCGCCCGCGGGAAATCACCGCTTCGCG
GCGTGCAGCGCCTGCTGCAAATCGTTCCACAGCAATTCCGGCTCTTCCAGCCCAACAGCGAAACGGATCGTCTGCTCGCT
CACGCCGAACCGGATGA

Upstream 100 bases:

>100_bases
CAATCACATCGTGTAGCTTCCTTCGATAAAGGAATGCCAAGACCGCACCGACCAGCAACGACAGAGCCTGATTTTCCATT
TGTAAAAAAGGTACAGGACA

Downstream 100 bases:

>100_bases
AGGTGGTCATCCGGTCGGGGATCTGCAGCGCGACCTTGGCCGGAACCACCAGCGTTTCCGGCCCTCCCCAGCTGACGCCG
AGGCGGATCTCGCGAAGCGC

Product: RNA polymerase sigma factor protein

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor PvdS; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Family Protein; Ferric Regulator Sigma-24 Subunit; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma Factor

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRASHRDVNGNAVVNAMIENKDKLLKTIESVIKSRSYSEDIFQDGVIKAYGVNVEGVRCPIGYAFRMVYNLALDESRRRR
QQMNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEQHCHLAMTEPARPDHERPREITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG

Sequences:

>Translated_218_residues
MRASHRDVNGNAVVNAMIENKDKLLKTIESVIKSRSYSEDIFQDGVIKAYGVNVEGVRCPIGYAFRMVYNLALDESRRRR
QQMNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEQHCHLAMTEPARPDHERPREITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG
>Mature_218_residues
MRASHRDVNGNAVVNAMIENKDKLLKTIESVIKSRSYSEDIFQDGVIKAYGVNVEGVRCPIGYAFRMVYNLALDESRRRR
QQMNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLEALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKA
AEQHCHLAMTEPARPDHERPREITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24358; Mature: 24358

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRASHRDVNGNAVVNAMIENKDKLLKTIESVIKSRSYSEDIFQDGVIKAYGVNVEGVRCP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCEECC
IGYAFRMVYNLALDESRRRRQQMNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKAAEQHCHLAMTEPARPDHERP
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCH
REITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MRASHRDVNGNAVVNAMIENKDKLLKTIESVIKSRSYSEDIFQDGVIKAYGVNVEGVRCP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCEECC
IGYAFRMVYNLALDESRRRRQQMNNYRSIDQVQEMTAPIPTVLDQLVAAETLRDVLASLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ALPKRTNDAFIRHRLNGVPQKDIAAELGVSRTLVNFMIKAAEQHCHLAMTEPARPDHERP
HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCH
REITASRRAAPAANRSTAIPALPAQQRNGSSARSRRTG
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA