| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
Click here to switch to the map view.
The map label for this gene is 86361133
Identifier: 86361133
GI number: 86361133
Start: 455924
End: 456616
Strand: Reverse
Name: 86361133
Synonym: RHE_PF00403
Alternate gene names: NA
Gene position: 456616-455924 (Counterclockwise)
Preceding gene: 86361134
Following gene: 86361132
Centisome position: 71.07
GC content: 63.06
Gene sequence:
>693_bases GTGGCGCGTGGGGTGGGACGTCCAATCAGACCTGGTGCCGACCTTCTCCTGAACGATGAGGAAAAGCCGGCCTATATCAG GCTGCACGACATCGGACGGGAGAGGCGTCCTCAGCCGCTGCAGGAATTCCTCAACGATATCGGCGGGCTGATGCTGTCGG CCGAGGCTCCTGCCGTGGCCAGTTTCGTCGCCGGCAAGGTGCTGCAGAGGCTGCTCAAGACAGGCAAGGTGCGGCCGGAG GGCGGCCCTCTTCCCGGTGTGCCAGAGGGGCTGGATGACGCCATCAGCCATCTGGCAAAATCCGGACGGAAGTTTGAGGC GATCGCCGGCCAGTTCAAGAGTCTCGCCGATAAGCTGCTTTGGAGACGTGGCCGAACCGGCCCCTTTGCAAGCCTGAACT TCGGCACCACGCACTCGCATGCGGTTCTGGTCGGTCCCGGCGGCCTGGAGGAGCGGGCCGATCTCCGGGTGGGCGTGATC TATATGGATCGCTACACCCGCTTTCCCGATCATGTTCAGACGCAGCCGCGCGCCTTCATTCTGCTTTCGCGGGGAGAAAT CTGCCTTGGTGATTCCCAGTGGTTTTCTGCCGCGACCGGAACGGTCTTCGCCAATGATGCCGGGCAGTCTTTCGCGATAA GATGCACGGCGCAGCCGCTTCTCGCGGTGTGGTGTCAGGTCGAGCCGGGATGA
Upstream 100 bases:
>100_bases GGAGGCGCCGATCTTCCAGGTCGCCGACTATGGCCTCGTCGCCGACCTCTTCGACGCCCTGCCGGAACTGCAAAAGGCGC TCTGAGCGAGGAGACCAAAC
Downstream 100 bases:
>100_bases ACGAGATGAGGCCGAAGCAGATCGTTTCGATCTCGCGGTCGCATCCCGCATAGTTAACAACCGAATTTGAATTAACAGGA GGGATTATCAAATGGACGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MARGVGRPIRPGADLLLNDEEKPAYIRLHDIGRERRPQPLQEFLNDIGGLMLSAEAPAVASFVAGKVLQRLLKTGKVRPE GGPLPGVPEGLDDAISHLAKSGRKFEAIAGQFKSLADKLLWRRGRTGPFASLNFGTTHSHAVLVGPGGLEERADLRVGVI YMDRYTRFPDHVQTQPRAFILLSRGEICLGDSQWFSAATGTVFANDAGQSFAIRCTAQPLLAVWCQVEPG
Sequences:
>Translated_230_residues MARGVGRPIRPGADLLLNDEEKPAYIRLHDIGRERRPQPLQEFLNDIGGLMLSAEAPAVASFVAGKVLQRLLKTGKVRPE GGPLPGVPEGLDDAISHLAKSGRKFEAIAGQFKSLADKLLWRRGRTGPFASLNFGTTHSHAVLVGPGGLEERADLRVGVI YMDRYTRFPDHVQTQPRAFILLSRGEICLGDSQWFSAATGTVFANDAGQSFAIRCTAQPLLAVWCQVEPG >Mature_229_residues ARGVGRPIRPGADLLLNDEEKPAYIRLHDIGRERRPQPLQEFLNDIGGLMLSAEAPAVASFVAGKVLQRLLKTGKVRPEG GPLPGVPEGLDDAISHLAKSGRKFEAIAGQFKSLADKLLWRRGRTGPFASLNFGTTHSHAVLVGPGGLEERADLRVGVIY MDRYTRFPDHVQTQPRAFILLSRGEICLGDSQWFSAATGTVFANDAGQSFAIRCTAQPLLAVWCQVEPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24964; Mature: 24833
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARGVGRPIRPGADLLLNDEEKPAYIRLHDIGRERRPQPLQEFLNDIGGLMLSAEAPAVA CCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCEEEECCCCHHH SFVAGKVLQRLLKTGKVRPEGGPLPGVPEGLDDAISHLAKSGRKFEAIAGQFKSLADKLL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH WRRGRTGPFASLNFGTTHSHAVLVGPGGLEERADLRVGVIYMDRYTRFPDHVQTQPRAFI HHCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCEEE LLSRGEICLGDSQWFSAATGTVFANDAGQSFAIRCTAQPLLAVWCQVEPG EEECCCEEECCCHHHHHCCCEEEECCCCCEEEEEEECCCEEEEEEEECCC >Mature Secondary Structure ARGVGRPIRPGADLLLNDEEKPAYIRLHDIGRERRPQPLQEFLNDIGGLMLSAEAPAVA CCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCEEEECCCCHHH SFVAGKVLQRLLKTGKVRPEGGPLPGVPEGLDDAISHLAKSGRKFEAIAGQFKSLADKLL HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH WRRGRTGPFASLNFGTTHSHAVLVGPGGLEERADLRVGVIYMDRYTRFPDHVQTQPRAFI HHCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCCEEE LLSRGEICLGDSQWFSAATGTVFANDAGQSFAIRCTAQPLLAVWCQVEPG EEECCCEEECCCHHHHHCCCEEEECCCCCEEEEEEECCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA