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The map label for this gene is ycjO [C]

Identifier: 86361105

GI number: 86361105

Start: 423257

End: 424147

Strand: Direct

Name: ycjO [C]

Synonym: RHE_PF00375

Alternate gene names: 86361105

Gene position: 423257-424147 (Clockwise)

Preceding gene: 86361104

Following gene: 86361106

Centisome position: 65.87

GC content: 57.46

Gene sequence:

>891_bases
ATGACATCGCTGGACACGAAATCGCGTGCCGCGTCGCGTGGCATGAGCGACATCCGCATTCGCAACCTGTTCATCATCCC
GACGATCCTGTTTCTGATCGTCTTCAACATCTTCCCGCTGATCTACTCGCTCGGCTATTCCTTCACCGACTTTCGCGCCT
CGTCGAACGCGCCGGTCAATTTCGTCGGCCTGCAGAACTACCGCGAGCTGCTCAACGATCCGTTCATATGGTCTAACTTT
GCCATCACCGCGAAATATGTGATCGTCTCCGTTACGGGACAGGTGATCGTCGGCTTCGGCACGGCGATGCTGCTCAACCG
CGACATTCCGATGAAGGGTCTTCTGACGACACTGCTGCTGCTGCCGATGATGCTGTCGATGGCAGTGGTCGGCCTCTTCT
GGAAGCTGCTCTACGATCCCTCCTTTGGCATCATCAACTACACGCTCGGCCTCGGCTCCTTCGAGTGGCTGTCGAATCCG
GATGTGGCGCTCTATGCGGTCGCCATCACTGATATCTGGATGTGGTCGCCGTTCGTGATGCTGCTGTCGCTCGCCGGCCT
TTCGGCCGTGCCAAAGCACCTCTACGAGGCAGCGGCGATCGACCGGGCGGGACCATTCTATACCTTCTTCCGCATCACAC
TGCCGCTGGTGGCGCCGATCCTGATGATCGCAATTATCTTCCGGACGATGGAAGCCTTCAAAACCTTCGACCTCGCCTAC
ATCCTGACCAGCCAGCCGACGACGGAGGTGATCTCCATTCGGCTCTATAAGATGGCCTTCCAGGAATGGCAGACGGGGCG
CTCCTGCGCACTCGCCTACATCGTGCTCATCATGATCCTCGCGATCACCAACATTTACGTCAAGTACCTCAACAAAGTGA
AGGAGCGCTGA

Upstream 100 bases:

>100_bases
TCGAGAGGGCGCGGCGCCCGGCATTCACTTCGCGCATTGTGATGCCTTCCGGCATCCGGCGCCGAACTCTCGGAGGAGGA
GAGGATTGGCCACCGCAGTC

Downstream 100 bases:

>100_bases
GATGGCTGCCGTCCAAACACGCTCCGAACGCGCGCTGAACCGGATTGCGATCGCCGCGGTACTGGTCATTACGCTGATCT
TCCTGGCGCCGATCTACTGG

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPVNFVGLQNYRELLNDPFIWSNF
AITAKYVIVSVTGQVIVGFGTAMLLNRDIPMKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYTLGLGSFEWLSNP
DVALYAVAITDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKTFDLAY
ILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLIMILAITNIYVKYLNKVKER

Sequences:

>Translated_296_residues
MTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPVNFVGLQNYRELLNDPFIWSNF
AITAKYVIVSVTGQVIVGFGTAMLLNRDIPMKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYTLGLGSFEWLSNP
DVALYAVAITDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKTFDLAY
ILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLIMILAITNIYVKYLNKVKER
>Mature_295_residues
TSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPVNFVGLQNYRELLNDPFIWSNFA
ITAKYVIVSVTGQVIVGFGTAMLLNRDIPMKGLLTTLLLLPMMLSMAVVGLFWKLLYDPSFGIINYTLGLGSFEWLSNPD
VALYAVAITDIWMWSPFVMLLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKTFDLAYI
LTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLIMILAITNIYVKYLNKVKER

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=261, Percent_Identity=28.735632183908, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1789861, Length=285, Percent_Identity=28.0701754385965, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790465, Length=254, Percent_Identity=29.5275590551181, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33450; Mature: 33319

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPVN
CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
FVGLQNYRELLNDPFIWSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPMKGLLTTLLL
EEEHHHHHHHHCCCCEECCHHHEEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LPMMLSMAVVGLFWKLLYDPSFGIINYTLGLGSFEWLSNPDVALYAVAITDIWMWSPFVM
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHCCCCCCEEEHHHHHHHHHHHHHHH
LLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKTFDLAY
HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLIMILAITNIYVKYLNKVKER
EEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSLDTKSRAASRGMSDIRIRNLFIIPTILFLIVFNIFPLIYSLGYSFTDFRASSNAPVN
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
FVGLQNYRELLNDPFIWSNFAITAKYVIVSVTGQVIVGFGTAMLLNRDIPMKGLLTTLLL
EEEHHHHHHHHCCCCEECCHHHEEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LPMMLSMAVVGLFWKLLYDPSFGIINYTLGLGSFEWLSNPDVALYAVAITDIWMWSPFVM
HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHCCCCCCEEEHHHHHHHHHHHHHHH
LLSLAGLSAVPKHLYEAAAIDRAGPFYTFFRITLPLVAPILMIAIIFRTMEAFKTFDLAY
HHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ILTSQPTTEVISIRLYKMAFQEWQTGRSCALAYIVLIMILAITNIYVKYLNKVKER
EEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]