| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is 86361091
Identifier: 86361091
GI number: 86361091
Start: 406557
End: 407882
Strand: Direct
Name: 86361091
Synonym: RHE_PF00361
Alternate gene names: NA
Gene position: 406557-407882 (Clockwise)
Preceding gene: 86361089
Following gene: 86361097
Centisome position: 63.28
GC content: 65.69
Gene sequence:
>1326_bases ATGCCCGCACCATTGACGCGCGTCGACACTACACCGCAGCTACCCGCTGCGGCGGATGCGGTCGTGATCGGCGGCGGCAT CGTCGGCGTTTTCGCGGCCTATTATCTGTCGCGCCGCGGATTGAAAGTCGCCCTCGTCGAAAAGGGCCTCATCGGGGCCG AACAGTCGAGCCGCAATTGGGGCTGGTGCCGGCAGCAGAACCGCGATGCCCGTGAATTGCCGATGTCGACGAAGAGCCTC GATCTTTGGGAGCGCTTCGCCACTGAGACCGGCGAGGACACCGGCTTTCGCCGCTGTGGCCTCCTCTATCTCAGCAATAG CGCGGAAGAACTCTCCGGCTGGGCTCGCTGGCGCGATTTCGCCCGATCGGTCGGCGTCACGACGCATATGCTGAGCAGCG CGGAAGCAACCGAACGCGGGGGGGCCACCGGGACCGCGTGGAAAGGCGGGGTCTTTTCGCCGACCGACGGCACCGCCGAT CCTGCAAGGGCGGCGCCTGCCGTCGCGCGTGCGATCCTGAAACTCGGCGGGACGGTGCATCAGTCCTGTGCGGCCCGCGG CATCGACATCGAAGGCGGCAGAGTTTCAGGCGTCGTCACGGAGCATGGCATGATTCGAACGAAGGTCGCGATCCTGGCCG GCGGCGCATGGGCATCAGCCTTCTGCCGCCAGCTCGGCATTCGATTTCCGCAAGCCTCGATCCGCTCGTCGATCCTCTCT GTGTCGCCAGGCGCGAGCGGGCTGCCGGATGCGCTACATACATCTAGGGTTTCCGTGACACGTCGCGCCGACGGTGGTTA CACGCTGGCCATCAGCGGCCGCGGCCGCGTCGATCCCACCGCGCAGCAGTTTCGTTTCGCACCGCAGTTCCTGCCGATGT TTGCCCGGCGCTGGCGAAGTCTGGCACCTGGCGGATTGGAGGGAATTCGCTCGGGCCACGAATCTTTGGCACGGTGGCGG CTCGACAGGCCGACGCCGATGGAGCGCATGCGCATTCTCGACCCGGCCGTCGATGAGGCGACCATTGCCCTCACACATGC GCGGGCGATCAAGCTGCTGCCCGCCTTGAAAAAAGCCGAAATCAACGCGGCCTGGGCGGGCTACATCGACAGCACGCCAG ACGGTGTGCCGGGGATCGGCGAGATTGCCTCCCTCCCGGGATTCATCCTGGCTGCGGGATTCAGCGGCCACGGTTTCGGT ATCGGACCCGGCGCCGGTCATCTGATTGCCGATATCGTCACGGGCGATGAGCCGATCGTCGATCCCCGGCCCTATCATCC CAATCGCTTCGCGGCCTCCGCCTGGGGCAAAGTCGCCGATTTCTAA
Upstream 100 bases:
>100_bases CCAGCCTCCCGCCAAGACGGAATCTTCTGCTGTCGCTGGATGAACTCCGGCAAAGGCGCGGCGGTGAATCCGCTAAACTG GCTGAAACGGAGACCATGCC
Downstream 100 bases:
>100_bases AGAGGCGCGTCCCGGGGGAAAGACACGACGCGCCTCAGGAGGCCAAGGGCATCCGCCGATTGGCGAATTGTGACGCCCTG CGGCCGTCTGCGGTCCGAAA
Product: deaminase protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MPAPLTRVDTTPQLPAAADAVVIGGGIVGVFAAYYLSRRGLKVALVEKGLIGAEQSSRNWGWCRQQNRDARELPMSTKSL DLWERFATETGEDTGFRRCGLLYLSNSAEELSGWARWRDFARSVGVTTHMLSSAEATERGGATGTAWKGGVFSPTDGTAD PARAAPAVARAILKLGGTVHQSCAARGIDIEGGRVSGVVTEHGMIRTKVAILAGGAWASAFCRQLGIRFPQASIRSSILS VSPGASGLPDALHTSRVSVTRRADGGYTLAISGRGRVDPTAQQFRFAPQFLPMFARRWRSLAPGGLEGIRSGHESLARWR LDRPTPMERMRILDPAVDEATIALTHARAIKLLPALKKAEINAAWAGYIDSTPDGVPGIGEIASLPGFILAAGFSGHGFG IGPGAGHLIADIVTGDEPIVDPRPYHPNRFAASAWGKVADF
Sequences:
>Translated_441_residues MPAPLTRVDTTPQLPAAADAVVIGGGIVGVFAAYYLSRRGLKVALVEKGLIGAEQSSRNWGWCRQQNRDARELPMSTKSL DLWERFATETGEDTGFRRCGLLYLSNSAEELSGWARWRDFARSVGVTTHMLSSAEATERGGATGTAWKGGVFSPTDGTAD PARAAPAVARAILKLGGTVHQSCAARGIDIEGGRVSGVVTEHGMIRTKVAILAGGAWASAFCRQLGIRFPQASIRSSILS VSPGASGLPDALHTSRVSVTRRADGGYTLAISGRGRVDPTAQQFRFAPQFLPMFARRWRSLAPGGLEGIRSGHESLARWR LDRPTPMERMRILDPAVDEATIALTHARAIKLLPALKKAEINAAWAGYIDSTPDGVPGIGEIASLPGFILAAGFSGHGFG IGPGAGHLIADIVTGDEPIVDPRPYHPNRFAASAWGKVADF >Mature_440_residues PAPLTRVDTTPQLPAAADAVVIGGGIVGVFAAYYLSRRGLKVALVEKGLIGAEQSSRNWGWCRQQNRDARELPMSTKSLD LWERFATETGEDTGFRRCGLLYLSNSAEELSGWARWRDFARSVGVTTHMLSSAEATERGGATGTAWKGGVFSPTDGTADP ARAAPAVARAILKLGGTVHQSCAARGIDIEGGRVSGVVTEHGMIRTKVAILAGGAWASAFCRQLGIRFPQASIRSSILSV SPGASGLPDALHTSRVSVTRRADGGYTLAISGRGRVDPTAQQFRFAPQFLPMFARRWRSLAPGGLEGIRSGHESLARWRL DRPTPMERMRILDPAVDEATIALTHARAIKLLPALKKAEINAAWAGYIDSTPDGVPGIGEIASLPGFILAAGFSGHGFGI GPGAGHLIADIVTGDEPIVDPRPYHPNRFAASAWGKVADF
Specific function: Unknown
COG id: COG0665
COG function: function code E; Glycine/D-amino acid oxidases (deaminating)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DadA oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI197927446, Length=437, Percent_Identity=25.858123569794, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI21361378, Length=437, Percent_Identity=25.858123569794, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI194306651, Length=424, Percent_Identity=22.1698113207547, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI20130091, Length=422, Percent_Identity=24.8815165876777, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI28571104, Length=248, Percent_Identity=28.2258064516129, Blast_Score=88, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 - InterPro: IPR012727 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: NA
Molecular weight: Translated: 46795; Mature: 46664
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAPLTRVDTTPQLPAAADAVVIGGGIVGVFAAYYLSRRGLKVALVEKGLIGAEQSSRNW CCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC GWCRQQNRDARELPMSTKSLDLWERFATETGEDTGFRRCGLLYLSNSAEELSGWARWRDF CHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHH ARSVGVTTHMLSSAEATERGGATGTAWKGGVFSPTDGTADPARAAPAVARAILKLGGTVH HHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH QSCAARGIDIEGGRVSGVVTEHGMIRTKVAILAGGAWASAFCRQLGIRFPQASIRSSILS HHHHHCCCCCCCCEEEEEEECCCHHHEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHC VSPGASGLPDALHTSRVSVTRRADGGYTLAISGRGRVDPTAQQFRFAPQFLPMFARRWRS CCCCCCCCCHHHHHHHEEEEEECCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHH LAPGGLEGIRSGHESLARWRLDRPTPMERMRILDPAVDEATIALTHARAIKLLPALKKAE CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH INAAWAGYIDSTPDGVPGIGEIASLPGFILAAGFSGHGFGIGPGAGHLIADIVTGDEPIV CCCEEECCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCHHEEEEECCCCCCC DPRPYHPNRFAASAWGKVADF CCCCCCCCCHHHHHCCHHCCC >Mature Secondary Structure PAPLTRVDTTPQLPAAADAVVIGGGIVGVFAAYYLSRRGLKVALVEKGLIGAEQSSRNW CCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC GWCRQQNRDARELPMSTKSLDLWERFATETGEDTGFRRCGLLYLSNSAEELSGWARWRDF CHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCCCCCHHEEEEEECCCHHHHHHHHHHHHH ARSVGVTTHMLSSAEATERGGATGTAWKGGVFSPTDGTADPARAAPAVARAILKLGGTVH HHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHH QSCAARGIDIEGGRVSGVVTEHGMIRTKVAILAGGAWASAFCRQLGIRFPQASIRSSILS HHHHHCCCCCCCCEEEEEEECCCHHHEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHC VSPGASGLPDALHTSRVSVTRRADGGYTLAISGRGRVDPTAQQFRFAPQFLPMFARRWRS CCCCCCCCCHHHHHHHEEEEEECCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHH LAPGGLEGIRSGHESLARWRLDRPTPMERMRILDPAVDEATIALTHARAIKLLPALKKAE CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH INAAWAGYIDSTPDGVPGIGEIASLPGFILAAGFSGHGFGIGPGAGHLIADIVTGDEPIV CCCEEECCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCHHEEEEECCCCCCC DPRPYHPNRFAASAWGKVADF CCCCCCCCCHHHHHCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8682785; 10984043; 8097014 [H]