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The map label for this gene is ydhC [H]

Identifier: 86361097

GI number: 86361097

Start: 415548

End: 416246

Strand: Direct

Name: ydhC [H]

Synonym: RHE_PF00367

Alternate gene names: 86361097

Gene position: 415548-416246 (Clockwise)

Preceding gene: 86361091

Following gene: 86361098

Centisome position: 64.68

GC content: 60.52

Gene sequence:

>699_bases
ATGATTTCTACGAGACTCAGAGAACCTATGACGGGCACGACCCAGATACTGCGCGCCAACAGTCTGGCCGGCGACGTCTA
CGAGGCAATCTTCAACCAGCTCATGTCGTTAAAGATCGCACCAGGTCAGCGCATCACGGTCGACAATCTGGTCAGGGAGT
TCAACGTCTCCCACACGCCGATCCGCGAAGCCCTCGGCCGGCTTGAAGGCGAAGGCCTCGTCGTCAAGCAGCATCTCGTC
GGCTATCGCGCTGCGCCCCAAATTACACGCCGCCGCTTCGACGAGCTCTATGAACTTCGTCTGCTGCTGGAACCCGCCGG
CGCGGCGAAGGCGGCCCAGGCGATGGACGACGAAAAGCTGACCATCCTGACGGAAGCCGCAGGTGTGATGTCGCGGAGCA
ACAATAGGGACGAGCGGGTGAACTATTCGGCCTTCGCCCGCAACGACGCCATTTTCCATGACCGCATCATGGAGTTTGCC
GGCAACGAGTTGATCCGCGAGACACTGGCATTCCAACACACGCATTTCCACATCTTTCGCCTGATGTTCCATCGCCGTGT
CACCGAGGAGGCGCTCGGCGAGCATCAAATGCTGCTCGATGCCTTTGCGGCGCGCGACCCGGGCGCGGCTGCGAGTGCAA
TGCGCATCCACATCGAACATTCGCGCGACCGGCTGTTGCCGGCGTTCGACGAAATCTGA

Upstream 100 bases:

>100_bases
GCATGATTTTTCCTCCCTATATTAAATCGTATAGGATATAGGATTGTCTCGGACGCAGCATCGTGCTAGCGATTGAAGCT
GTCAAGAGGCAAGGCAGCAG

Downstream 100 bases:

>100_bases
GGAACTGGGAAGGCAAGACCCGCTTGCCCGATCTAACAACGAGGAGGAGAACCTATGCCAGGCAAGAAAATCCTGATGCT
GACCGGCGATTTCACCGAGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MISTRLREPMTGTTQILRANSLAGDVYEAIFNQLMSLKIAPGQRITVDNLVREFNVSHTPIREALGRLEGEGLVVKQHLV
GYRAAPQITRRRFDELYELRLLLEPAGAAKAAQAMDDEKLTILTEAAGVMSRSNNRDERVNYSAFARNDAIFHDRIMEFA
GNELIRETLAFQHTHFHIFRLMFHRRVTEEALGEHQMLLDAFAARDPGAAASAMRIHIEHSRDRLLPAFDEI

Sequences:

>Translated_232_residues
MISTRLREPMTGTTQILRANSLAGDVYEAIFNQLMSLKIAPGQRITVDNLVREFNVSHTPIREALGRLEGEGLVVKQHLV
GYRAAPQITRRRFDELYELRLLLEPAGAAKAAQAMDDEKLTILTEAAGVMSRSNNRDERVNYSAFARNDAIFHDRIMEFA
GNELIRETLAFQHTHFHIFRLMFHRRVTEEALGEHQMLLDAFAARDPGAAASAMRIHIEHSRDRLLPAFDEI
>Mature_232_residues
MISTRLREPMTGTTQILRANSLAGDVYEAIFNQLMSLKIAPGQRITVDNLVREFNVSHTPIREALGRLEGEGLVVKQHLV
GYRAAPQITRRRFDELYELRLLLEPAGAAKAAQAMDDEKLTILTEAAGVMSRSNNRDERVNYSAFARNDAIFHDRIMEFA
GNELIRETLAFQHTHFHIFRLMFHRRVTEEALGEHQMLLDAFAARDPGAAASAMRIHIEHSRDRLLPAFDEI

Specific function: Sialic acid (NANA) and N-acetylmannosamine utilization [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26363; Mature: 26363

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTRLREPMTGTTQILRANSLAGDVYEAIFNQLMSLKIAPGQRITVDNLVREFNVSHTP
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCEECHHHHHHHHCCCCCH
IREALGRLEGEGLVVKQHLVGYRAAPQITRRRFDELYELRLLLEPAGAAKAAQAMDDEKL
HHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCE
TILTEAAGVMSRSNNRDERVNYSAFARNDAIFHDRIMEFAGNELIRETLAFQHTHFHIFR
EEHHHHHHHHHCCCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMFHRRVTEEALGEHQMLLDAFAARDPGAAASAMRIHIEHSRDRLLPAFDEI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHCCC
>Mature Secondary Structure
MISTRLREPMTGTTQILRANSLAGDVYEAIFNQLMSLKIAPGQRITVDNLVREFNVSHTP
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCEECHHHHHHHHCCCCCH
IREALGRLEGEGLVVKQHLVGYRAAPQITRRRFDELYELRLLLEPAGAAKAAQAMDDEKL
HHHHHHHCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCE
TILTEAAGVMSRSNNRDERVNYSAFARNDAIFHDRIMEFAGNELIRETLAFQHTHFHIFR
EEHHHHHHHHHCCCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMFHRRVTEEALGEHQMLLDAFAARDPGAAASAMRIHIEHSRDRLLPAFDEI
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]