Click here to switch to the map view.

The map label for this gene is ygbK [C]

Identifier: 86361077

GI number: 86361077

Start: 388582

End: 389862

Strand: Direct

Name: ygbK [C]

Synonym: RHE_PF00347

Alternate gene names: 86361077

Gene position: 388582-389862 (Clockwise)

Preceding gene: 86361076

Following gene: 86361078

Centisome position: 60.48

GC content: 66.59

Gene sequence:

>1281_bases
ATGGCAATTTCACTTGGGTCGATCGCCGACGACTATACCGGCGCGTCCGACCTCGCAAACACGCTGACGAAAAACGGCCT
GCGCACGGTGCAGACGGTCGGCATTCCGAATCCGTCGCTCGCGCTGCCGGAGGTCGATGCGGTGGTCGTCTCCCTGAAGA
TCCGCTCCGTTCCCGCTTCGGAGGCCGTGGCCGCTGCGACCAAAGCCGAGCGCTGGCTGCGCCAGCAGGGCGCGGCGCAT
GTGCTTTACAAGATCTGTTCGACGTTCGATTCCACAGATGCCGGCAATATCGGCCCTGTCACCGAGGCTTTGAGCGCGGC
GGCGGGCGGCGGCGGCGTGCTGGTGACACCGGCCTTTCCGGAGACGGGGCGCACCCTCTATCTCGGCCACCTCTTCGTCG
GCGGCCAGCCGTTGAGCGAAAGTCCGCTCAAGGACCACCCGCTGAACCCTATGCACGACGCCAATCTCGTGCGGGTTCTC
GCCCGGCAATCGCGTGGCACCGTCGGACTGATCGATCTCCCAGCCATCGCAGCCGGACCGGCCGCCACCAGGGCGAAGCT
CGATGCCCTCCTCAGGACAGGCGTGACCATGGCTATCGCCGACGCAATTTTCGAGCGCGATCTGGAAACGCTGGGCGAGA
TCGCGCTGGAAACGCCGGTATCCACCGGCGCGTCCGGTCTCGGCCTCGGCCTTGCCCGCGCGCTCGTCCGCTCCGGCCGG
ATATCCGGCCGCGCGACAGGTGAAGACGTCATTCGCCCCGTAGGCGGGTTTTCGGCGATCATTGCCGGCAGCTGTTCGAA
GGCGACGCTGCACCAGATCGGCGTCGCCGAACGAGCGATGCCGGTGCTGCGGCTTGATCCCGAGCGGCTGCTGGCCGCCG
GCCCGGATGAGATCGCCGCGGCGATTTCCTGGGCCGGAGAGCGCATTTCTGCCGGCCCGGTCGTGGTCGCCGCGAGCGCG
GCGCCCGAAACCGTATCCCGGCTGCAATCGCAATATGGCCGGGAGGCCTCCGGCCACGCGATCGAGACCGCCACATCGAT
CATTGCCGCCGAGCTGGTGGAGAGAGGCGTGCGGCGCCTCGTGGTCGCAGGCGGCGAGACCTCGGGAGCCGCGGTCGACA
AGCTCGCCATACCGGCATTTCTGATCGGCCCCGAAATTGCTCCCGGCGTGCCGGTGCTGCGTACAGTCGGCAATAGGCAG
GGCGACATGCTTCTGGCGTTGAAATCAGGAAATTTTGGAGGCGAAGATTTCTTCATTGCCGCGCTGGCGATGATGCAGTG
A

Upstream 100 bases:

>100_bases
CCGGCTGGGTTACGACCGTTTCATCGGCTGCGAATATGTCCCGCGCGGCCAGACACTGGACGGCCTTGGCTGGTTCAAAC
CTTTTGCACGGAGCTAGACC

Downstream 100 bases:

>100_bases
CAAGACGAAGGCCTCAACACACTCGCAGCAAGCGGTTTGCGAAAGGGTCGGTCCGCCAGCATAAGATGCGGCGACCCATG
ATCGCAAAGCCATAACATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MAISLGSIADDYTGASDLANTLTKNGLRTVQTVGIPNPSLALPEVDAVVVSLKIRSVPASEAVAAATKAERWLRQQGAAH
VLYKICSTFDSTDAGNIGPVTEALSAAAGGGGVLVTPAFPETGRTLYLGHLFVGGQPLSESPLKDHPLNPMHDANLVRVL
ARQSRGTVGLIDLPAIAAGPAATRAKLDALLRTGVTMAIADAIFERDLETLGEIALETPVSTGASGLGLGLARALVRSGR
ISGRATGEDVIRPVGGFSAIIAGSCSKATLHQIGVAERAMPVLRLDPERLLAAGPDEIAAAISWAGERISAGPVVVAASA
APETVSRLQSQYGREASGHAIETATSIIAAELVERGVRRLVVAGGETSGAAVDKLAIPAFLIGPEIAPGVPVLRTVGNRQ
GDMLLALKSGNFGGEDFFIAALAMMQ

Sequences:

>Translated_426_residues
MAISLGSIADDYTGASDLANTLTKNGLRTVQTVGIPNPSLALPEVDAVVVSLKIRSVPASEAVAAATKAERWLRQQGAAH
VLYKICSTFDSTDAGNIGPVTEALSAAAGGGGVLVTPAFPETGRTLYLGHLFVGGQPLSESPLKDHPLNPMHDANLVRVL
ARQSRGTVGLIDLPAIAAGPAATRAKLDALLRTGVTMAIADAIFERDLETLGEIALETPVSTGASGLGLGLARALVRSGR
ISGRATGEDVIRPVGGFSAIIAGSCSKATLHQIGVAERAMPVLRLDPERLLAAGPDEIAAAISWAGERISAGPVVVAASA
APETVSRLQSQYGREASGHAIETATSIIAAELVERGVRRLVVAGGETSGAAVDKLAIPAFLIGPEIAPGVPVLRTVGNRQ
GDMLLALKSGNFGGEDFFIAALAMMQ
>Mature_425_residues
AISLGSIADDYTGASDLANTLTKNGLRTVQTVGIPNPSLALPEVDAVVVSLKIRSVPASEAVAAATKAERWLRQQGAAHV
LYKICSTFDSTDAGNIGPVTEALSAAAGGGGVLVTPAFPETGRTLYLGHLFVGGQPLSESPLKDHPLNPMHDANLVRVLA
RQSRGTVGLIDLPAIAAGPAATRAKLDALLRTGVTMAIADAIFERDLETLGEIALETPVSTGASGLGLGLARALVRSGRI
SGRATGEDVIRPVGGFSAIIAGSCSKATLHQIGVAERAMPVLRLDPERLLAAGPDEIAAAISWAGERISAGPVVVAASAA
PETVSRLQSQYGREASGHAIETATSIIAAELVERGVRRLVVAGGETSGAAVDKLAIPAFLIGPEIAPGVPVLRTVGNRQG
DMLLALKSGNFGGEDFFIAALAMMQ

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=393, Percent_Identity=41.4758269720102, Blast_Score=276, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 43538; Mature: 43407

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISLGSIADDYTGASDLANTLTKNGLRTVQTVGIPNPSLALPEVDAVVVSLKIRSVPAS
CEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCH
EAVAAATKAERWLRQQGAAHVLYKICSTFDSTDAGNIGPVTEALSAAAGGGGVLVTPAFP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCC
ETGRTLYLGHLFVGGQPLSESPLKDHPLNPMHDANLVRVLARQSRGTVGLIDLPAIAAGP
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
AATRAKLDALLRTGVTMAIADAIFERDLETLGEIALETPVSTGASGLGLGLARALVRSGR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
ISGRATGEDVIRPVGGFSAIIAGSCSKATLHQIGVAERAMPVLRLDPERLLAAGPDEIAA
CCCCCCCHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEECHHHHHHCCHHHHHH
AISWAGERISAGPVVVAASAAPETVSRLQSQYGREASGHAIETATSIIAAELVERGVRRL
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEE
VVAGGETSGAAVDKLAIPAFLIGPEIAPGVPVLRTVGNRQGDMLLALKSGNFGGEDFFIA
EEECCCCCCCHHHHHHCCHHEECCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
ALAMMQ
HHHHCC
>Mature Secondary Structure 
AISLGSIADDYTGASDLANTLTKNGLRTVQTVGIPNPSLALPEVDAVVVSLKIRSVPAS
EEECCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCH
EAVAAATKAERWLRQQGAAHVLYKICSTFDSTDAGNIGPVTEALSAAAGGGGVLVTPAFP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCC
ETGRTLYLGHLFVGGQPLSESPLKDHPLNPMHDANLVRVLARQSRGTVGLIDLPAIAAGP
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
AATRAKLDALLRTGVTMAIADAIFERDLETLGEIALETPVSTGASGLGLGLARALVRSGR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
ISGRATGEDVIRPVGGFSAIIAGSCSKATLHQIGVAERAMPVLRLDPERLLAAGPDEIAA
CCCCCCCHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCEEECHHHHHHCCHHHHHH
AISWAGERISAGPVVVAASAAPETVSRLQSQYGREASGHAIETATSIIAAELVERGVRRL
HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEE
VVAGGETSGAAVDKLAIPAFLIGPEIAPGVPVLRTVGNRQGDMLLALKSGNFGGEDFFIA
EEECCCCCCCHHHHHHCCHHEECCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
ALAMMQ
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]