| Definition | Rhizobium etli CFN 42 plasmid p42f, complete sequence. |
|---|---|
| Accession | NC_007766 |
| Length | 642,517 |
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The map label for this gene is 86360966
Identifier: 86360966
GI number: 86360966
Start: 251510
End: 252340
Strand: Direct
Name: 86360966
Synonym: RHE_PF00236
Alternate gene names: NA
Gene position: 251510-252340 (Clockwise)
Preceding gene: 86360965
Following gene: 86360967
Centisome position: 39.14
GC content: 61.85
Gene sequence:
>831_bases ATGAGACGGATTGCCATGACGGGTGCCGCCGGACGTGTCGGGACGCTGCTGCGCCCGTTTCTGCGGCAGCATTTTGAGCA TCTCCGCCTGATCGATATTCATGAGCCCGCGGATCTGGCCGAGAATGAAGGCTTCCTTGGTGCCGATCTGTCAAAGCTCG AAGAGGCAAAGGCCGCTTTGGGCGACATCGACGGTGTCGTTCATCTGGCTGGTCTTGCGGGCGGCGTTGATATCAACGCG ATTTTGCAGGCGAATGTGCTCGGCACCTACAATCTCTACGAGGCCGCCCGGATCAACAAGGTCGAGCGGGTCGTCTACGC CTCAAGCAACCATACGACCGGCTTTTATCCCCGCGGCGAGGTCATTTCGCCGCTCGATCCCATGCGACCGGACAGTCCCT ACGGACTTTCCAAATGCTGGGGCGAGCTGGTGGCGGGGCTTTATTACGACACATCGGGCATCCGCTCCCTTTCCATCCGC ATCGGCAATGCCGGCAGCTACCCCAACAGCGAGCGCTCGATCGCGATCTGGATCAGCGCCCGGGATCTCGCGCAGCTGGT GCAGATCGGGCTCACCCATCCCTCGATCGCCGCGACGGTGGTCTACGGCGTATCCGATACGGACGAAAAATGGTGGGACA ACGATCTGGCGAGGCGGCTCGGCTACCAGCCGCAGGATCGGCCGCGTGATCACGCCCGTATCGAGAACGGCGCCGAGGGA CGGGTCGCCCGTGCCTTTCAGGGCGGCGGTTTCTGCGAATTCAACCATGACGGCAACATCCGCATGCGCGATGCCGAGGG TCTCATCAAAGACCTGGAGACGGCATCGTGA
Upstream 100 bases:
>100_bases GCGGCGGGAAGCCGAAGCGCATGATGCGATGAAGAAACACATACTGAATGCGCGTGCCCGCATGTTTCAGGGGGTTTGAG CGACAATGGGAGGAAGGACG
Downstream 100 bases:
>100_bases CGGCGCCCCGCATCGTTGAACCGAAGATCCGTTCGGTGCTGCAGCAGCCGCTGACGGTCGGTGAATCGCCGGTGTGGGAC GAAAAGACCGGCGCGCTCTG
Product: hypothetical protein
Products: NA
Alternate protein names: 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NAD Dependent Epimerase/Dehydratase Family Protein; TDP-Glucose-4 6-Dehydratase-Related Protein; Sugar Epimerase/Dehydratase-Like Protein; DTDP-Glucose 4 6-Dehydratase; Oxidoreductase Protein; UDP-Glucose 4-Epimerase Protein; UDP Glucose Epimerase; Sugar Epimerase/Dehydratase Homolog; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Dehydratase/Epimerase; Epimerase/Dehydratase; UDP-Glucose 4-Epimerase; Nucleoside-Diphosphate-Sugar Epimerase; Short Chain Dehydrogenase Family Protein; NDP-Sugar Epimerase; Nucleoside-Diphosphate-Sugar Epimerase Dehydratase Protein; NAD Dependent Epimerase/Dehydratase
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MRRIAMTGAAGRVGTLLRPFLRQHFEHLRLIDIHEPADLAENEGFLGADLSKLEEAKAALGDIDGVVHLAGLAGGVDINA ILQANVLGTYNLYEAARINKVERVVYASSNHTTGFYPRGEVISPLDPMRPDSPYGLSKCWGELVAGLYYDTSGIRSLSIR IGNAGSYPNSERSIAIWISARDLAQLVQIGLTHPSIAATVVYGVSDTDEKWWDNDLARRLGYQPQDRPRDHARIENGAEG RVARAFQGGGFCEFNHDGNIRMRDAEGLIKDLETAS
Sequences:
>Translated_276_residues MRRIAMTGAAGRVGTLLRPFLRQHFEHLRLIDIHEPADLAENEGFLGADLSKLEEAKAALGDIDGVVHLAGLAGGVDINA ILQANVLGTYNLYEAARINKVERVVYASSNHTTGFYPRGEVISPLDPMRPDSPYGLSKCWGELVAGLYYDTSGIRSLSIR IGNAGSYPNSERSIAIWISARDLAQLVQIGLTHPSIAATVVYGVSDTDEKWWDNDLARRLGYQPQDRPRDHARIENGAEG RVARAFQGGGFCEFNHDGNIRMRDAEGLIKDLETAS >Mature_276_residues MRRIAMTGAAGRVGTLLRPFLRQHFEHLRLIDIHEPADLAENEGFLGADLSKLEEAKAALGDIDGVVHLAGLAGGVDINA ILQANVLGTYNLYEAARINKVERVVYASSNHTTGFYPRGEVISPLDPMRPDSPYGLSKCWGELVAGLYYDTSGIRSLSIR IGNAGSYPNSERSIAIWISARDLAQLVQIGLTHPSIAATVVYGVSDTDEKWWDNDLARRLGYQPQDRPRDHARIENGAEG RVARAFQGGGFCEFNHDGNIRMRDAEGLIKDLETAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30214; Mature: 30214
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRIAMTGAAGRVGTLLRPFLRQHFEHLRLIDIHEPADLAENEGFLGADLSKLEEAKAAL CCEEEECCCCCHHHHHHHHHHHHHHHHCEEEECCCCCCHHCCCCCCCCCHHHHHHHHHHH GDIDGVVHLAGLAGGVDINAILQANVLGTYNLYEAARINKVERVVYASSNHTTGFYPRGE HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCC VISPLDPMRPDSPYGLSKCWGELVAGLYYDTSGIRSLSIRIGNAGSYPNSERSIAIWISA CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEH RDLAQLVQIGLTHPSIAATVVYGVSDTDEKWWDNDLARRLGYQPQDRPRDHARIENGAEG HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC RVARAFQGGGFCEFNHDGNIRMRDAEGLIKDLETAS CEEEEECCCCEEEECCCCCEEEEHHHHHHHHHHCCC >Mature Secondary Structure MRRIAMTGAAGRVGTLLRPFLRQHFEHLRLIDIHEPADLAENEGFLGADLSKLEEAKAAL CCEEEECCCCCHHHHHHHHHHHHHHHHCEEEECCCCCCHHCCCCCCCCCHHHHHHHHHHH GDIDGVVHLAGLAGGVDINAILQANVLGTYNLYEAARINKVERVVYASSNHTTGFYPRGE HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCCC VISPLDPMRPDSPYGLSKCWGELVAGLYYDTSGIRSLSIRIGNAGSYPNSERSIAIWISA CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEH RDLAQLVQIGLTHPSIAATVVYGVSDTDEKWWDNDLARRLGYQPQDRPRDHARIENGAEG HHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCC RVARAFQGGGFCEFNHDGNIRMRDAEGLIKDLETAS CEEEEECCCCEEEECCCCCEEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA