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The map label for this gene is ybaF [H]

Identifier: 85860941

GI number: 85860941

Start: 3108961

End: 3109740

Strand: Direct

Name: ybaF [H]

Synonym: SYN_00208

Alternate gene names: 85860941

Gene position: 3108961-3109740 (Clockwise)

Preceding gene: 85860940

Following gene: 85860942

Centisome position: 97.79

GC content: 58.08

Gene sequence:

>780_bases
ATGTACATTCTGGGACAATATATTCCGCAATCTTCCGTCATTTCCCGGCTGGATCCGCGGGTCAAGATCCTCTCGCTCGT
CGTCCTGAGTTTTGCCATTCTGCGGGCGGACGGCTGGACAGTCCTGCTGGTCAGCCTTTTCTGGAGCCTTGTCCTCTACG
GCGCCCACCTCATGCCGACCCGGCTTTTCCAGGCGCTGAAACCCCTGCTGTTCTTTTTTGTTCTGCTTTTCTCGCTGCAT
CTTTTCTTTTCCCAGGGCGCCCCCCTCTTTCCCGGACACCCCTGGCTGGAAGGAATCACCTGGGAAGGACTTTACCGCGG
CGCTCTGGTCACCTGGCAGTTTGCAGCCCTGGTGGTCGGCTCTTCTCTTCTGACCATGACCACTTCCCCCTCGGAACTGA
TCTGCGGCGTGGAACGCCTGCTGCGCCCCTTGAACCGTATCGGGATTCCTTCCCATGATCTGGCCATGATGATCTCCCTT
GCCCTGCGGTTTGTTCCCACCGTGCTGGATGAATTCAACCGCGTTAAAAAAGCGCAGATGGCCCGCGGCATGGATTTCGG
CAGAGGGGGACCTGTTCGGCGCATTAGCGGCATCGCCGGCCTGGCAATACCTGTCGTCCTGGGGGCCTTGAGGCGGGCAG
AGGAACTGGCCTGGGCCATGGAAGGACGAGGATACCAGCGGGGGCATCGCACCTATCTTCATGAACTGCGCCTCACCCGT
CCGGATTATATCGCGGTTCTCCTGATTCTCCTCTTCTTAACGGAACTTCATCTTCTATAA

Upstream 100 bases:

>100_bases
CGGTCCGGACTGATATCCTGGATTTTGAGGACGTCTGCCGGGAGATTGCCGCCTGGAAGAGTCACCCTGTTGAATCCGTC
GCGTAACAACCGGAAAGGCC

Downstream 100 bases:

>100_bases
CCGGACCGATGCCTGGAAACATTCCTGCTGTAAAGACCAGTGATGTCCGGTTTCCGCAGGCACGATGGTGTTCACCACTG
TCAGAAGAAGTGCCGGTCGT

Product: cobalt ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MYILGQYIPQSSVISRLDPRVKILSLVVLSFAILRADGWTVLLVSLFWSLVLYGAHLMPTRLFQALKPLLFFFVLLFSLH
LFFSQGAPLFPGHPWLEGITWEGLYRGALVTWQFAALVVGSSLLTMTTSPSELICGVERLLRPLNRIGIPSHDLAMMISL
ALRFVPTVLDEFNRVKKAQMARGMDFGRGGPVRRISGIAGLAIPVVLGALRRAEELAWAMEGRGYQRGHRTYLHELRLTR
PDYIAVLLILLFLTELHLL

Sequences:

>Translated_259_residues
MYILGQYIPQSSVISRLDPRVKILSLVVLSFAILRADGWTVLLVSLFWSLVLYGAHLMPTRLFQALKPLLFFFVLLFSLH
LFFSQGAPLFPGHPWLEGITWEGLYRGALVTWQFAALVVGSSLLTMTTSPSELICGVERLLRPLNRIGIPSHDLAMMISL
ALRFVPTVLDEFNRVKKAQMARGMDFGRGGPVRRISGIAGLAIPVVLGALRRAEELAWAMEGRGYQRGHRTYLHELRLTR
PDYIAVLLILLFLTELHLL
>Mature_259_residues
MYILGQYIPQSSVISRLDPRVKILSLVVLSFAILRADGWTVLLVSLFWSLVLYGAHLMPTRLFQALKPLLFFFVLLFSLH
LFFSQGAPLFPGHPWLEGITWEGLYRGALVTWQFAALVVGSSLLTMTTSPSELICGVERLLRPLNRIGIPSHDLAMMISL
ALRFVPTVLDEFNRVKKAQMARGMDFGRGGPVRRISGIAGLAIPVVLGALRRAEELAWAMEGRGYQRGHRTYLHELRLTR
PDYIAVLLILLFLTELHLL

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 29150; Mature: 29150

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYILGQYIPQSSVISRLDPRVKILSLVVLSFAILRADGWTVLLVSLFWSLVLYGAHLMPT
CCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RLFQALKPLLFFFVLLFSLHLFFSQGAPLFPGHPWLEGITWEGLYRGALVTWQFAALVVG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHC
SSLLTMTTSPSELICGVERLLRPLNRIGIPSHDLAMMISLALRFVPTVLDEFNRVKKAQM
CHHHEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARGMDFGRGGPVRRISGIAGLAIPVVLGALRRAEELAWAMEGRGYQRGHRTYLHELRLTR
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
PDYIAVLLILLFLTELHLL
CHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]