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The map label for this gene is perM [C]

Identifier: 85860942

GI number: 85860942

Start: 3109955

End: 3111007

Strand: Direct

Name: perM [C]

Synonym: SYN_00207

Alternate gene names: 85860942

Gene position: 3109955-3111007 (Clockwise)

Preceding gene: 85860941

Following gene: 85860946

Centisome position: 97.82

GC content: 52.61

Gene sequence:

>1053_bases
ATGGAAATATCAAAGACGCGCCATCTCGCGTTTGTATTGCTGCTGGGGCTGGTCGGTTTCGGCTTTCTTTATCTGATGAA
ACCTTTTTTCTATCCCCTCTTCTGGGCCATCATCATTTCCAGCATCGTCCACCCCCTTTATGCCCGGCTGATCTTGCGCT
GGCCAAGCCCAAATCTTCTTTCGGCCGTACTGCTGGTCCTGGTTCTGCTGATTCTCATTTTGCCGACAATTTTCATCGGC
AGCCTTCTCGTATCTCAATCGATGAGCATGTACAATACGCTGAGTTCCGATTCCAGCCACATTGCCCGCAATCTCCAGGA
GCTGCTCGGTTGGATCTCCAGCCACCCTTACATTCAGAAACTCGATATCGATCAAAATTTCTGGATGGAAAAGCTGTCCG
AAATGCTCCGCAGTATTGCCAACTACATCTTTACCCGCCTTTCGAGCCTGACTCAGAACACACTGGCTGCCGTTGCTCAG
TTTGCCATAATGCTTTACGCCCTCTTCTTCTTTATCCGGGACGGAGAGAAACTGCTGCAAAGCGCCATGCGCCTTCTCCC
TCTGGGCAACCAGCGGGAGCGGCTTCTTTTCGATCGCTTCATCAACACAGCCAAATCCACACTTAAGGTCACATTGATCA
TTGGCGGATTGCAGGGCACCCTGGGAGCACTGGCCTTCTGGATCGCGGGGATTGAAGGCTCCGTGCTGTGGGGCGTCATC
ATGATCGTCACGGCCATCATACCGGGCATAGGCTGTTCCATCGTCTGGGCGCCGGCCGGCATCATTCTGCTGATTAGCGG
GCATCTCTGGGAGGGTATAATGATCCTTCTGTTCGGCGGCCTTGTAATCAGTCTGGTGGACAATCTGCTGCGCCCCATTC
TGCTGGAAAGGGACGTGCAGATGCATCCTCTTCTCATTTTCCTGTCCACCCTCGGCGGGATTGTTCTTTTCGGCTTTTCC
GGTTTCGTCCTGGGACCGATCATCGCTTCGCTTATGCAGTCCATCTGCCAGATGTATGAACAGCTTTACCGGGAGTATGA
TGTTTCGGAGTAA

Upstream 100 bases:

>100_bases
TAAAACCATTGATTTTCTTAACAGATTTGATGTAAATTTCCCCTGCTGAACTCATCGGCTTTCAACCATCAGGGTAAATC
CGCTTTCGGGGCTCATTTTT

Downstream 100 bases:

>100_bases
GCGGCAGAGAGCGGATTCATCCCCGGCGTCAGGTCCGGGTTCCGGCGGCTATCCGGGAAATGAGAAAGATTCAACATGGA
GCGGGAAAATAACAACACTG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MEISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLILRWPSPNLLSAVLLVLVLLILILPTIFIG
SLLVSQSMSMYNTLSSDSSHIARNLQELLGWISSHPYIQKLDIDQNFWMEKLSEMLRSIANYIFTRLSSLTQNTLAAVAQ
FAIMLYALFFFIRDGEKLLQSAMRLLPLGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSVLWGVI
MIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILLERDVQMHPLLIFLSTLGGIVLFGFS
GFVLGPIIASLMQSICQMYEQLYREYDVSE

Sequences:

>Translated_350_residues
MEISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLILRWPSPNLLSAVLLVLVLLILILPTIFIG
SLLVSQSMSMYNTLSSDSSHIARNLQELLGWISSHPYIQKLDIDQNFWMEKLSEMLRSIANYIFTRLSSLTQNTLAAVAQ
FAIMLYALFFFIRDGEKLLQSAMRLLPLGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSVLWGVI
MIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILLERDVQMHPLLIFLSTLGGIVLFGFS
GFVLGPIIASLMQSICQMYEQLYREYDVSE
>Mature_350_residues
MEISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLILRWPSPNLLSAVLLVLVLLILILPTIFIG
SLLVSQSMSMYNTLSSDSSHIARNLQELLGWISSHPYIQKLDIDQNFWMEKLSEMLRSIANYIFTRLSSLTQNTLAAVAQ
FAIMLYALFFFIRDGEKLLQSAMRLLPLGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSVLWGVI
MIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILLERDVQMHPLLIFLSTLGGIVLFGFS
GFVLGPIIASLMQSICQMYEQLYREYDVSE

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=366, Percent_Identity=25.1366120218579, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39197; Mature: 39197

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLILRWPSPNLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
SAVLLVLVLLILILPTIFIGSLLVSQSMSMYNTLSSDSSHIARNLQELLGWISSHPYIQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEE
LDIDQNFWMEKLSEMLRSIANYIFTRLSSLTQNTLAAVAQFAIMLYALFFFIRDGEKLLQ
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
SAMRLLPLGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSVLWGVI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHH
MIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILLERDVQ
HHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
MHPLLIFLSTLGGIVLFGFSGFVLGPIIASLMQSICQMYEQLYREYDVSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLILRWPSPNLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
SAVLLVLVLLILILPTIFIGSLLVSQSMSMYNTLSSDSSHIARNLQELLGWISSHPYIQK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEE
LDIDQNFWMEKLSEMLRSIANYIFTRLSSLTQNTLAAVAQFAIMLYALFFFIRDGEKLLQ
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
SAMRLLPLGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSVLWGVI
HHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHH
MIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILLERDVQ
HHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
MHPLLIFLSTLGGIVLFGFSGFVLGPIIASLMQSICQMYEQLYREYDVSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]