| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is menB [H]
Identifier: 85860871
GI number: 85860871
Start: 3032541
End: 3033689
Strand: Direct
Name: menB [H]
Synonym: SYN_01654
Alternate gene names: 85860871
Gene position: 3032541-3033689 (Clockwise)
Preceding gene: 85860870
Following gene: 85860872
Centisome position: 95.38
GC content: 52.92
Gene sequence:
>1149_bases ATGAGTTTAGATTGGATGCCAAGAGAACACGGGTTAAAGAATCACAGCCGACATACTGAACAGTGGTGGGGCACGGAAGC ACCCTGCACCGTATACGAGAAGAGACCCTTGAAGGACCCCAAGGGTAATGTAGTTCCCGGCCTTTACAGCGCCTGGATCA GACTGAACAACCCGGGCCAGTACAATTCTTATACAACCGAGATGGTTAAAGGTGTTATCGCCGGTTTTGAGAATTCCTCC ACCGACCGCGAAGTCGTTGCCGTCGTCTTCACCGGAACAGGTCCTAATGCCTTCTGTACAGGCGGCAACACGAAGGAATA TTCCGAATATTACAGCATGAGACCGGAAGAATACGGCTCCTACATGGAACTGTTCAACAATATGGTGGACTCCATCCTGA TGTGCAAAAAACCGGTCATCTGCCGCGTTAACGGCATGAGAGTGGCTGGTGGTCAGGAAATCGGCACTGCCACAGACATT ACCGTTTCTTCCGACTTGGCCATTTTCGGTCAGGCCGGACCCCGCCACGGCTCAGCCCCCGTCGGCGGCGCCTCCGATTT TCTCCCCTGGTTCCTCAGCATTGAAGACGCCATGTGGAACTGCGTAAGCTGTGAAATGTGGTCTGCCTACAAGATGAAAG CCAAAAACCTCATCTCCAAGGCCCTTCCCGTGCTGAAGGACGACAAAGGCAACTGGGTAAGAAACCCCCAGGTCTATACC GACACCTATGTAAAAGACGGCGAGATCGTTTACGGCGAACCCAAGACCGGCGAAGAAGCCAAACAGGCACGTGCCTGGGT CAACGAGAAACTGAAGAACAACGATTACGATTTCTCCCTCATCGATGCCGAAGTCGACCGGATTGTCTGGGTTTTCGCAA ATCTGTTCCCCGGCTGCCTGATGAAATCCATCGACGGCATCCGCCAGAAGAAGAAATTCTGGTGGGATCAGATCAAGAAC GACCACCGTTACTGGCTCGGCACCAACATGATGGGCGAAGCCTTCCTGGGCTTCGGCGCATTCAACACGAAGAAGATCAC CGGAAAAGACACGATCGACTTCATAAAGAATCGTCAGCTGATCGCGGAAGGCGCCCTGGTCGACGAAGCTTTCATGGAGC AGGTCCTCGGAAAACCGCTGGCAAAATAA
Upstream 100 bases:
>100_bases ATGATGAAGTTCACAAAGCCGGTTCTCCGGAAAAGAGAATTGTTTTGAAGCCTGATTTTTAGAAAATCACCAAATAAAAT AACGTATAAGGGGGATTAGT
Downstream 100 bases:
>100_bases TTTTCAGATTCAAATTAAAGGGGGGGACTCCCCCCCTTTTTTATTTCAAACAGCTCCACAAAAAGGCTGAGAGAACTGAG CGTGATATTCATGAGCTCTT
Product: enoyl-CoA hydratase/isomerase family protein
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 382; Mature: 381
Protein sequence:
>382_residues MSLDWMPREHGLKNHSRHTEQWWGTEAPCTVYEKRPLKDPKGNVVPGLYSAWIRLNNPGQYNSYTTEMVKGVIAGFENSS TDREVVAVVFTGTGPNAFCTGGNTKEYSEYYSMRPEEYGSYMELFNNMVDSILMCKKPVICRVNGMRVAGGQEIGTATDI TVSSDLAIFGQAGPRHGSAPVGGASDFLPWFLSIEDAMWNCVSCEMWSAYKMKAKNLISKALPVLKDDKGNWVRNPQVYT DTYVKDGEIVYGEPKTGEEAKQARAWVNEKLKNNDYDFSLIDAEVDRIVWVFANLFPGCLMKSIDGIRQKKKFWWDQIKN DHRYWLGTNMMGEAFLGFGAFNTKKITGKDTIDFIKNRQLIAEGALVDEAFMEQVLGKPLAK
Sequences:
>Translated_382_residues MSLDWMPREHGLKNHSRHTEQWWGTEAPCTVYEKRPLKDPKGNVVPGLYSAWIRLNNPGQYNSYTTEMVKGVIAGFENSS TDREVVAVVFTGTGPNAFCTGGNTKEYSEYYSMRPEEYGSYMELFNNMVDSILMCKKPVICRVNGMRVAGGQEIGTATDI TVSSDLAIFGQAGPRHGSAPVGGASDFLPWFLSIEDAMWNCVSCEMWSAYKMKAKNLISKALPVLKDDKGNWVRNPQVYT DTYVKDGEIVYGEPKTGEEAKQARAWVNEKLKNNDYDFSLIDAEVDRIVWVFANLFPGCLMKSIDGIRQKKKFWWDQIKN DHRYWLGTNMMGEAFLGFGAFNTKKITGKDTIDFIKNRQLIAEGALVDEAFMEQVLGKPLAK >Mature_381_residues SLDWMPREHGLKNHSRHTEQWWGTEAPCTVYEKRPLKDPKGNVVPGLYSAWIRLNNPGQYNSYTTEMVKGVIAGFENSST DREVVAVVFTGTGPNAFCTGGNTKEYSEYYSMRPEEYGSYMELFNNMVDSILMCKKPVICRVNGMRVAGGQEIGTATDIT VSSDLAIFGQAGPRHGSAPVGGASDFLPWFLSIEDAMWNCVSCEMWSAYKMKAKNLISKALPVLKDDKGNWVRNPQVYTD TYVKDGEIVYGEPKTGEEAKQARAWVNEKLKNNDYDFSLIDAEVDRIVWVFANLFPGCLMKSIDGIRQKKKFWWDQIKND HRYWLGTNMMGEAFLGFGAFNTKKITGKDTIDFIKNRQLIAEGALVDEAFMEQVLGKPLAK
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Escherichia coli, GI1788597, Length=186, Percent_Identity=26.3440860215054, Blast_Score=84, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25145438, Length=176, Percent_Identity=30.6818181818182, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554946, Length=175, Percent_Identity=29.1428571428571, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI20129971, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24653477, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 43102; Mature: 42971
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS50270 NGF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDWMPREHGLKNHSRHTEQWWGTEAPCTVYEKRPLKDPKGNVVPGLYSAWIRLNNPGQ CCCCCCCHHCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC YNSYTTEMVKGVIAGFENSSTDREVVAVVFTGTGPNAFCTGGNTKEYSEYYSMRPEEYGS CCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEECCCCCHHHHHHHHCCCHHHHH YMELFNNMVDSILMCKKPVICRVNGMRVAGGQEIGTATDITVSSDLAIFGQAGPRHGSAP HHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCC VGGASDFLPWFLSIEDAMWNCVSCEMWSAYKMKAKNLISKALPVLKDDKGNWVRNPQVYT CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEE DTYVKDGEIVYGEPKTGEEAKQARAWVNEKLKNNDYDFSLIDAEVDRIVWVFANLFPGCL CCEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHH MKSIDGIRQKKKFWWDQIKNDHRYWLGTNMMGEAFLGFGAFNTKKITGKDTIDFIKNRQL HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCEECCCHHHHHHHCCHH IAEGALVDEAFMEQVLGKPLAK HHHCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure SLDWMPREHGLKNHSRHTEQWWGTEAPCTVYEKRPLKDPKGNVVPGLYSAWIRLNNPGQ CCCCCCHHCCCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCC YNSYTTEMVKGVIAGFENSSTDREVVAVVFTGTGPNAFCTGGNTKEYSEYYSMRPEEYGS CCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEECCCCCHHHHHHHHCCCHHHHH YMELFNNMVDSILMCKKPVICRVNGMRVAGGQEIGTATDITVSSDLAIFGQAGPRHGSAP HHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCEEEEEECCCEEEEECCCCCCCCCC VGGASDFLPWFLSIEDAMWNCVSCEMWSAYKMKAKNLISKALPVLKDDKGNWVRNPQVYT CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEE DTYVKDGEIVYGEPKTGEEAKQARAWVNEKLKNNDYDFSLIDAEVDRIVWVFANLFPGCL CCEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHH MKSIDGIRQKKKFWWDQIKNDHRYWLGTNMMGEAFLGFGAFNTKKITGKDTIDFIKNRQL HHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCCEECCCHHHHHHHCCHH IAEGALVDEAFMEQVLGKPLAK HHHCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]