Definition Syntrophus aciditrophicus SB chromosome, complete genome.
Accession NC_007759
Length 3,179,300

Click here to switch to the map view.

The map label for this gene is hcp [H]

Identifier: 85860676

GI number: 85860676

Start: 2852615

End: 2854243

Strand: Direct

Name: hcp [H]

Synonym: SYN_02993

Alternate gene names: 85860676

Gene position: 2852615-2854243 (Clockwise)

Preceding gene: 85860673

Following gene: 85860677

Centisome position: 89.72

GC content: 59.18

Gene sequence:

>1629_bases
ATGTTTTGTTTTCAATGTGAGCAGACGGCAGGTGGAACAGGATGCACGAAAGGCGGCGTATGCGGGAAAACGCCGGAAGT
GGCGGCTCTGCAGGATCTTCTGATCTACGAGCTGAAGGGGCTGTCCCTGGGCGCCCTCGAAGCGGACAAAGTCGGTATCC
ACGACGAGGAAGTCGACCGCTTTACGGTTGAAGCGCTCTTTTCCACCCTGACCAATGTGGATTTCGATCCCGACCGTTTC
GTCGTTCTTCTGAACCAGGGTGTGAAGCTTCGCGAACAGCTCAGGGAAAAAGTGAAAAAAGCCGGAGGAAAGGCTGACAT
CGCCGACGAGTCAGCGCTTTTCCAGCCTGCGGCGACGCTGGAGGGCCTGGTCGCCCAGGGCGATAAAGTGGGCATCAAAT
CCGATCATCAGGCCGATCCCGATGTGCTGGCCCTGAAGGAACTCCTCATCTACGGCATCAAGGGGGGCGCGGCCTACGCC
GATCATGCCCGCATCCTCGGGAAAACCGATGCGGCAATAACGCGGTTTCTCTACGAAGCCCTGGCCGCTACGCGCAATGC
AGCACTGGGAGTCAACGATCTGGTTTCCCTCGTGCTGAAATGCGGGGAGATCAACCTCAAGACCATGGAACTCCTCGACG
CCGCCCACACGGAAGCCTATGGACACCCCGTTCCCACCGCCGTTCCCCTGGGGGCAAAGAAAGGGAAAGCCATCCTCGTT
TCCGGACACGATCTCAAGGATCTGGATGAACTCCTGCAACAGACCGCCGGAAAGGGGATCAACGTCTACACCCATGGAGA
GATGCTCCCCACTCACGGTTATCCGGGGCTGAAGAAGCATCCCCATTTCTACGGCCATTACGGGACGGCCTGGCAGAACC
AGAAAAAGGAATTTGCCGCCTTCCCGGGCGCCATCCTCATGACGACCAACTGCATCCAGAAACCCGCGGAGTCCTACCAG
GACAACATCTTCACCGCCGGACTCGTGGGATGGCCGGGGGTCACCCATATCGCCGACCGGAACTTCACTCCCGTAATCGA
GAAAGCCCTGGCCCTGCACGGATTTCCGGAAGATGTTCCCGGGAAATCGGTATTAGTCGGTTTCGGCAGGAATGCCGTTC
TCGGCGTGGCCGACAAGGTCATCGAAGGCGTGAAGAGCAAGGCCATCCGCCATTTCTTCCTGGTTGCGGGCTGCGACGGC
GCCAAGCCGGGACGGAACTACTACACGGAGTTCGTGGAAAAGGTTCCGAAGGACTGCGTGGTCCTTACCCTGGCCTGCGG
AAAATTCCGCTTCTTCGACAAGGATCTGGGAGACATCGGCGGCATTCCCCGGCTGCTCGACATCGGCCAGTGCAATGACG
CCTACTCGGCCATCGCCATCGCCGGGGCGCTCGCCAACGCCTTCGGCTGCGGGGTGAACGACCTGCCCCTGTCCATGGTT
CTCTCCTGGTACGAGCAGAAGGCCGTGGCCATCCTCCTGACCCTGCTCCATCTTGGAATTCGGGATATCCGGCTGGGGCC
CAGTCTTCCGGCCTTCGTCACCCCCAACATCCTGAACGTCCTGGTGCAGAACTTCAACATCATGCCCATATCGACACCTG
ACGAGGATCTGAAAGCGATCCTCGGTTAA

Upstream 100 bases:

>100_bases
CATTATGAGGTAATGGCCCCAGAAATCAAGGGGGCTTTCAGGAAGTTTTTCCCCCATGACAAAAAAATTCACGATCCCGG
CAGGGAAAAGGAGGAAGAAC

Downstream 100 bases:

>100_bases
AGAGAAAGGAGATTGTCATGGAAGGAGAGAAAAAAGAAAAAGAGAAGGGAATCCCCTTCAACCTGGATGCCGAGGTCGCT
TACGCGGACGGATCCATCGT

Product: hydroxylamine reductase

Products: NA

Alternate protein names: Hybrid-cluster protein; HCP [H]

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDRFTVEALFSTLTNVDFDPDRF
VVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATLEGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYA
DHARILGKTDAAITRFLYEALAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV
SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAAFPGAILMTTNCIQKPAESYQ
DNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVPGKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDG
AKPGRNYYTEFVEKVPKDCVVLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV
LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAILG

Sequences:

>Translated_542_residues
MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDRFTVEALFSTLTNVDFDPDRF
VVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATLEGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYA
DHARILGKTDAAITRFLYEALAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV
SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAAFPGAILMTTNCIQKPAESYQ
DNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVPGKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDG
AKPGRNYYTEFVEKVPKDCVVLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV
LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAILG
>Mature_542_residues
MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDRFTVEALFSTLTNVDFDPDRF
VVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATLEGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYA
DHARILGKTDAAITRFLYEALAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV
SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAAFPGAILMTTNCIQKPAESYQ
DNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVPGKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDG
AKPGRNYYTEFVEKVPKDCVVLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV
LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAILG

Specific function: Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O [H]

COG id: COG1151

COG function: function code C; 6Fe-6S prismane cluster-containing protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HCP family [H]

Homologues:

Organism=Escherichia coli, GI87081794, Length=548, Percent_Identity=48.7226277372263, Blast_Score=523, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010048
- InterPro:   IPR004137
- InterPro:   IPR011254
- InterPro:   IPR016099
- InterPro:   IPR016100 [H]

Pfam domain/function: PF03063 Prismane [H]

EC number: NA

Molecular weight: Translated: 58128; Mature: 58128

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDR
CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH
FTVEALFSTLTNVDFDPDRFVVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATL
HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHH
EGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYADHARILGKTDAAITRFLYEA
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
LAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV
HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAA
ECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHH
FPGAILMTTNCIQKPAESYQDNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVP
CCCHHEEEHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCC
GKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDGAKPGRNYYTEFVEKVPKDCV
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCEE
VLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV
EEEEECCCEEEHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAI
HHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHH
LG
CC
>Mature Secondary Structure
MFCFQCEQTAGGTGCTKGGVCGKTPEVAALQDLLIYELKGLSLGALEADKVGIHDEEVDR
CCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH
FTVEALFSTLTNVDFDPDRFVVLLNQGVKLREQLREKVKKAGGKADIADESALFQPAATL
HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHH
EGLVAQGDKVGIKSDHQADPDVLALKELLIYGIKGGAAYADHARILGKTDAAITRFLYEA
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHH
LAATRNAALGVNDLVSLVLKCGEINLKTMELLDAAHTEAYGHPVPTAVPLGAKKGKAILV
HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE
SGHDLKDLDELLQQTAGKGINVYTHGEMLPTHGYPGLKKHPHFYGHYGTAWQNQKKEFAA
ECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHH
FPGAILMTTNCIQKPAESYQDNIFTAGLVGWPGVTHIADRNFTPVIEKALALHGFPEDVP
CCCHHEEEHHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCC
GKSVLVGFGRNAVLGVADKVIEGVKSKAIRHFFLVAGCDGAKPGRNYYTEFVEKVPKDCV
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHCCCCEE
VLTLACGKFRFFDKDLGDIGGIPRLLDIGQCNDAYSAIAIAGALANAFGCGVNDLPLSMV
EEEEECCCEEEHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
LSWYEQKAVAILLTLLHLGIRDIRLGPSLPAFVTPNILNVLVQNFNIMPISTPDEDLKAI
HHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHHH
LG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA