Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 85860546

GI number: 85860546

Start: 2725210

End: 2725599

Strand: Direct

Name: tdcF [C]

Synonym: SYN_01814

Alternate gene names: 85860546

Gene position: 2725210-2725599 (Clockwise)

Preceding gene: 85860545

Following gene: 85860547

Centisome position: 85.72

GC content: 56.15

Gene sequence:

>390_bases
ATGGAAAAGAAATGGGTTCATGCCGCAGAGGCCCCTCGGCCGGTGGGTCCCTATGCCCAGGCGGTAAAAGCCGGGGGATG
GCTTTATGTCTCGGGACAGATTCCTCTGGATCCTCAGACAGGTCAACTCTTGACAGGCTCCTTTGCCGAACAGGCTGAAA
AAACGCTTGACAACCTGGCCGCCATCCTGAAAGCGGGCGGCTCCAGTCTCGATTCCGTCGTCAAGGTTACCATCTATCTC
GCCGATATGGCTTATTTCAATGAATTCAACACGGTTTACGCCTCCTATTTCGAGAATTCCCGTCCCGCCCGATCCTGCGT
CGCGGTCAGTCGGCTGCCCAAGGATGCCCTGCTGGAAATCGAAGCGGTCGCCCTGTGTGAGGATTCATGA

Upstream 100 bases:

>100_bases
CAACGAAAATCCGTCAGCTTCCCTTGACCGGAAGACCGCTTCATGCGATAAATTTTACAAACGTTGTGTGAATTAAAGAC
AGAGGAGAAAGGGGATCAGG

Downstream 100 bases:

>100_bases
TCGACTCTTTACTGAACAACCTGAGCGGCTACATGGCGGACTCCAGTTTCGCCGCTTACCTGGCTGCGTATCTGGGGGGG
CTTCTGGTCAGTTTCACCCC

Product: translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MEKKWVHAAEAPRPVGPYAQAVKAGGWLYVSGQIPLDPQTGQLLTGSFAEQAEKTLDNLAAILKAGGSSLDSVVKVTIYL
ADMAYFNEFNTVYASYFENSRPARSCVAVSRLPKDALLEIEAVALCEDS

Sequences:

>Translated_129_residues
MEKKWVHAAEAPRPVGPYAQAVKAGGWLYVSGQIPLDPQTGQLLTGSFAEQAEKTLDNLAAILKAGGSSLDSVVKVTIYL
ADMAYFNEFNTVYASYFENSRPARSCVAVSRLPKDALLEIEAVALCEDS
>Mature_129_residues
MEKKWVHAAEAPRPVGPYAQAVKAGGWLYVSGQIPLDPQTGQLLTGSFAEQAEKTLDNLAAILKAGGSSLDSVVKVTIYL
ADMAYFNEFNTVYASYFENSRPARSCVAVSRLPKDALLEIEAVALCEDS

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=45.5284552845528, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=42.0634920634921, Blast_Score=111, Evalue=2e-26,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=41.6, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=26.6129032258064, Blast_Score=67, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=124, Percent_Identity=45.1612903225806, Blast_Score=113, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=124, Percent_Identity=45.1612903225806, Blast_Score=113, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=44.4444444444444, Blast_Score=113, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=115, Percent_Identity=47.8260869565217, Blast_Score=115, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6320899, Length=103, Percent_Identity=49.5145631067961, Blast_Score=110, Evalue=5e-26,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=47.9674796747967, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13913; Mature: 13913

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKWVHAAEAPRPVGPYAQAVKAGGWLYVSGQIPLDPQTGQLLTGSFAEQAEKTLDNLA
CCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHH
AILKAGGSSLDSVVKVTIYLADMAYFNEFNTVYASYFENSRPARSCVAVSRLPKDALLEI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHH
EAVALCEDS
HHEEEECCC
>Mature Secondary Structure
MEKKWVHAAEAPRPVGPYAQAVKAGGWLYVSGQIPLDPQTGQLLTGSFAEQAEKTLDNLA
CCCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHH
AILKAGGSSLDSVVKVTIYLADMAYFNEFNTVYASYFENSRPARSCVAVSRLPKDALLEI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHH
EAVALCEDS
HHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]