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The map label for this gene is ydfM [H]

Identifier: 85860389

GI number: 85860389

Start: 2560255

End: 2561520

Strand: Direct

Name: ydfM [H]

Synonym: SYN_01172

Alternate gene names: 85860389

Gene position: 2560255-2561520 (Clockwise)

Preceding gene: 85860388

Following gene: 85860390

Centisome position: 80.53

GC content: 52.05

Gene sequence:

>1266_bases
ATGAAAACGCTCGGGGTCGGCAGCGAAAATCAATCTGCACACCGGCCGGAAAAACGCCTCGACCAGGAAGCGGAATTGAT
CGGCAAGGTCGCCCTTTACGCCTTCCTTTTGAATCTCGGTCTCGCGGCCATGAAAGGCGTTCTTGCATTCTGGTCCGACA
GCCTTGCCGTCACCGCAGGCGCCATCGATTCCGCAACCGATTCCGCAGCGTCACTCGTCCTCTATGGGGGCCTTAAGCTT
TCGACGAGAAAAACGCCTTCCTTTCCAGAAGGGCTTTACAAAATCGAAAATGTTCTATCCGTCTTTGTCGCACTGTCGAT
CTTTTTCGCCGGCCTTGAGATCGCGCTGAAGTTATTCAAACAGAGCGTTTCATCACCACGGATTTCCCTGGATATTGTTG
TCCTGCTTCTGGTCAGTGTGGCGGCAACTTTCCTGTTCGGCCGGTATGCGATCCTGACCGGGAGGAAAACGGAATCGCCC
ACCCTGATCGCGGAAGGTCGGCATCGTCAGGTGGATGTCCTGTCTTCCAGCGTCGTGTTGATATCCGTCCTTCCGGAGTA
TTTCGGATACCACGTTTCCCTGTTCGGTCTTTCAATCGATTCGATCGCTGCATGTGCGGTCCTGATCTTCATTGCCTTCG
CCGGATGGGAATTGCTTTCGAACGGGATGCGGGTGCTGCTGGATGCCTCTCTCGATTTCGAAACCCTGGACGAGGCGAGA
AGCATCCTGAAAAACCATCCCATGGTGGTAAATATCCGATCACTTTCAGGTCGTAACGCAGGCCGTTTCCGCTTTCTTGA
AGCCAGTGTCATCCTGCGGACGGGCGATCTCAAAAAAGCCCACCGGATCAGCGAAGATCTGGAGCAAAGCATCAGGGAAA
AGATTCCCCATGTGGAACGCATTATGATTCATTATGAACCCCAATCTCATTCCCACATCCGCTTTGCTGTCCCCCTGTCT
GATCCCGCTGGTGTCATCAGTCGACATTTCGGTGAATCTCCTTTCTTTGCCATCCTGACGTTCCGCCCTGCGGATCGTTC
CATCGTGCAGCAGGATATTATTGAAAATCCGCACAAAGAAATTGAAACGGCTAAAGGCATTCGTGTGGCGGAATGGCTCG
TTGAGCAGAAAATCGATCAGATTTTTATGACCGAGGATCTTTCCCACAAAGGCCCCTCTTATGTATTCAGCAATGCCGGG
GTAAACGTGCAAAGGACCGATGCGGTACATCTTGAAGAGATTCTTGAAAACCTCAAGACCTGGTAA

Upstream 100 bases:

>100_bases
CCATCGGAACGGTGCGCTCCACCATCTCCGGAGGACGAAATTTCTATACCGCAACGGGGGGAAAATCGCCTTCCGGGGCG
CCGGGAAACAAACAGGACAA

Downstream 100 bases:

>100_bases
ATTTCCCCGAGCATAACCTGTCCCACCTGCGGGAATCCTCTTTCCTGAAAGGGCCGGCCATCCCGGTTGAGCAAAATAGA
GTAGCGTTTTTGCAACTTTA

Product: Co/Zn/Cd cation transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKTLGVGSENQSAHRPEKRLDQEAELIGKVALYAFLLNLGLAAMKGVLAFWSDSLAVTAGAIDSATDSAASLVLYGGLKL
STRKTPSFPEGLYKIENVLSVFVALSIFFAGLEIALKLFKQSVSSPRISLDIVVLLLVSVAATFLFGRYAILTGRKTESP
TLIAEGRHRQVDVLSSSVVLISVLPEYFGYHVSLFGLSIDSIAACAVLIFIAFAGWELLSNGMRVLLDASLDFETLDEAR
SILKNHPMVVNIRSLSGRNAGRFRFLEASVILRTGDLKKAHRISEDLEQSIREKIPHVERIMIHYEPQSHSHIRFAVPLS
DPAGVISRHFGESPFFAILTFRPADRSIVQQDIIENPHKEIETAKGIRVAEWLVEQKIDQIFMTEDLSHKGPSYVFSNAG
VNVQRTDAVHLEEILENLKTW

Sequences:

>Translated_421_residues
MKTLGVGSENQSAHRPEKRLDQEAELIGKVALYAFLLNLGLAAMKGVLAFWSDSLAVTAGAIDSATDSAASLVLYGGLKL
STRKTPSFPEGLYKIENVLSVFVALSIFFAGLEIALKLFKQSVSSPRISLDIVVLLLVSVAATFLFGRYAILTGRKTESP
TLIAEGRHRQVDVLSSSVVLISVLPEYFGYHVSLFGLSIDSIAACAVLIFIAFAGWELLSNGMRVLLDASLDFETLDEAR
SILKNHPMVVNIRSLSGRNAGRFRFLEASVILRTGDLKKAHRISEDLEQSIREKIPHVERIMIHYEPQSHSHIRFAVPLS
DPAGVISRHFGESPFFAILTFRPADRSIVQQDIIENPHKEIETAKGIRVAEWLVEQKIDQIFMTEDLSHKGPSYVFSNAG
VNVQRTDAVHLEEILENLKTW
>Mature_421_residues
MKTLGVGSENQSAHRPEKRLDQEAELIGKVALYAFLLNLGLAAMKGVLAFWSDSLAVTAGAIDSATDSAASLVLYGGLKL
STRKTPSFPEGLYKIENVLSVFVALSIFFAGLEIALKLFKQSVSSPRISLDIVVLLLVSVAATFLFGRYAILTGRKTESP
TLIAEGRHRQVDVLSSSVVLISVLPEYFGYHVSLFGLSIDSIAACAVLIFIAFAGWELLSNGMRVLLDASLDFETLDEAR
SILKNHPMVVNIRSLSGRNAGRFRFLEASVILRTGDLKKAHRISEDLEQSIREKIPHVERIMIHYEPQSHSHIRFAVPLS
DPAGVISRHFGESPFFAILTFRPADRSIVQQDIIENPHKEIETAKGIRVAEWLVEQKIDQIFMTEDLSHKGPSYVFSNAG
VNVQRTDAVHLEEILENLKTW

Specific function: Unknown

COG id: COG0053

COG function: function code P; Predicted Co/Zn/Cd cation transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]

Homologues:

Organism=Escherichia coli, GI1790349, Length=275, Percent_Identity=24, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115533506, Length=323, Percent_Identity=23.2198142414861, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115533508, Length=323, Percent_Identity=23.2198142414861, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002524 [H]

Pfam domain/function: PF01545 Cation_efflux [H]

EC number: NA

Molecular weight: Translated: 46552; Mature: 46552

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLGVGSENQSAHRPEKRLDQEAELIGKVALYAFLLNLGLAAMKGVLAFWSDSLAVTAG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
AIDSATDSAASLVLYGGLKLSTRKTPSFPEGLYKIENVLSVFVALSIFFAGLEIALKLFK
CCCCCCCCHHEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVSSPRISLDIVVLLLVSVAATFLFGRYAILTGRKTESPTLIAEGRHRQVDVLSSSVVL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCCCEEHHHHCHHHH
ISVLPEYFGYHVSLFGLSIDSIAACAVLIFIAFAGWELLSNGMRVLLDASLDFETLDEAR
HHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
SILKNHPMVVNIRSLSGRNAGRFRFLEASVILRTGDLKKAHRISEDLEQSIREKIPHVER
HHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
IMIHYEPQSHSHIRFAVPLSDPAGVISRHFGESPFFAILTFRPADRSIVQQDIIENPHKE
EEEEECCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCHHH
IETAKGIRVAEWLVEQKIDQIFMTEDLSHKGPSYVFSNAGVNVQRTDAVHLEEILENLKT
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
W
C
>Mature Secondary Structure
MKTLGVGSENQSAHRPEKRLDQEAELIGKVALYAFLLNLGLAAMKGVLAFWSDSLAVTAG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
AIDSATDSAASLVLYGGLKLSTRKTPSFPEGLYKIENVLSVFVALSIFFAGLEIALKLFK
CCCCCCCCHHEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSVSSPRISLDIVVLLLVSVAATFLFGRYAILTGRKTESPTLIAEGRHRQVDVLSSSVVL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCCCEEHHHHCHHHH
ISVLPEYFGYHVSLFGLSIDSIAACAVLIFIAFAGWELLSNGMRVLLDASLDFETLDEAR
HHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH
SILKNHPMVVNIRSLSGRNAGRFRFLEASVILRTGDLKKAHRISEDLEQSIREKIPHVER
HHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEE
IMIHYEPQSHSHIRFAVPLSDPAGVISRHFGESPFFAILTFRPADRSIVQQDIIENPHKE
EEEEECCCCCCEEEEEEECCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCHHH
IETAKGIRVAEWLVEQKIDQIFMTEDLSHKGPSYVFSNAGVNVQRTDAVHLEEILENLKT
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]