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The map label for this gene is hypD [H]

Identifier: 85860206

GI number: 85860206

Start: 2403579

End: 2404685

Strand: Direct

Name: hypD [H]

Synonym: SYN_00598

Alternate gene names: 85860206

Gene position: 2403579-2404685 (Clockwise)

Preceding gene: 85860205

Following gene: 85860207

Centisome position: 75.6

GC content: 59.44

Gene sequence:

>1107_bases
GTGAAATTTATTGACGAATACCGGGATCCCGATCTCGTTCGGCACCTTCTCGATGCCGTGGCGGCGCTGGCAGCCCGGGT
CGGCCGTCGGATCAGCCTGATGGAGATCTGCGGCACTCACACGCACGCCATCGGGCGCTTTGGAATCCGCAGGCTCCTTC
CCGAAAACATCCGCCTCATCTCCGGCCCCGGATGCCCCGTCTGCGTCACCTCCATCCATGACGTTGACCGAGCCCTGTAT
CTGGCGGATCGGCCTCATGTCGTCTTCGCCACCTTCGGCGACATGCTCCGCGTTCCCGGAACGGGCGGCAGAAGTCTCCA
GCGGCTTCGCGCGGCAGGGGCGGATGTGCGCATTGTCTCTTCGACCCTGGACAGCCTTCGCCTCGCTGAAGAGAACCCGG
AAAAGGAGGTTGTTTTCATGGGAATCGGCTTCGAAACAACGGCGCCGACCGTGGCATCAGCTATCCGCAAAGCCGGGCTT
AAAGGGCTGAACAACTATTCCGTCTTTTCCGTACACAAGACCGTCCCGCAGGCGATCTCCGCCCTCATCGAGGATCCCGA
ACTCTCCATTGACGGCTTTATCTGTCCCGGCCATGTCAGCGTCATCACCGGCGTCGATGCTTATAAGCGCATCCCGGAAA
CAGGACGGGCTGCCGTGATCACCGGTTTTGAACCGGTGGACATTCTCGAAGGCATCCTCATGATCCTGCGCCAGCTTCAG
GAAGGGCGGTTCGAGGTCGCCATCCAGTATGCCCGGGGGGTAAACAGGGAGGGAAATCCCCAGGCCCTGAACATGATGGG
CGAGGTCTTCGAAACAAGGGAGGCAGAGTGGAGGGGACTGGGAAGAATCCCCCAGAGCGGTCTTTTCATCCGGGAGAGGT
ATGCTGACTTCGACGCACTAAGAAAAGGAAACCTGCCTGAGATCCGTTCCATCGAATTTGAAGCGTGCCGATGCGGTGAA
ATCCTGCGGGGCGTGATCTCCCCAGAGGAATGCCGCCTTTTCGGAAAAGTCTGCACTCCGGCAAACCCGGTGGGGCCCTG
CATGGTGTCCAGCGAGGGGACCTGCGCGGCATACCTGAAATATGAAATCCATAACCGAAAATCGTAA

Upstream 100 bases:

>100_bases
GTGGGCGACTATGTCATCTGTCACGCCGGGTACGCCATCCACCGGATCGATGAAAAGCTGGCGCTGGAGAACCTTGCTTT
GCTGAAAGAGATTATCGATC

Downstream 100 bases:

>100_bases
CGGAAATTCCGTTACGGAAATAAAGGAGATGCTCCATGAAAGTAACCGTCGTCAAGAATGTCCTCGATGCCAATGAGCGG
ATCGCCAATGACAACCGCGG

Product: hydrogenase isoenzymes formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MKFIDEYRDPDLVRHLLDAVAALAARVGRRISLMEICGTHTHAIGRFGIRRLLPENIRLISGPGCPVCVTSIHDVDRALY
LADRPHVVFATFGDMLRVPGTGGRSLQRLRAAGADVRIVSSTLDSLRLAEENPEKEVVFMGIGFETTAPTVASAIRKAGL
KGLNNYSVFSVHKTVPQAISALIEDPELSIDGFICPGHVSVITGVDAYKRIPETGRAAVITGFEPVDILEGILMILRQLQ
EGRFEVAIQYARGVNREGNPQALNMMGEVFETREAEWRGLGRIPQSGLFIRERYADFDALRKGNLPEIRSIEFEACRCGE
ILRGVISPEECRLFGKVCTPANPVGPCMVSSEGTCAAYLKYEIHNRKS

Sequences:

>Translated_368_residues
MKFIDEYRDPDLVRHLLDAVAALAARVGRRISLMEICGTHTHAIGRFGIRRLLPENIRLISGPGCPVCVTSIHDVDRALY
LADRPHVVFATFGDMLRVPGTGGRSLQRLRAAGADVRIVSSTLDSLRLAEENPEKEVVFMGIGFETTAPTVASAIRKAGL
KGLNNYSVFSVHKTVPQAISALIEDPELSIDGFICPGHVSVITGVDAYKRIPETGRAAVITGFEPVDILEGILMILRQLQ
EGRFEVAIQYARGVNREGNPQALNMMGEVFETREAEWRGLGRIPQSGLFIRERYADFDALRKGNLPEIRSIEFEACRCGE
ILRGVISPEECRLFGKVCTPANPVGPCMVSSEGTCAAYLKYEIHNRKS
>Mature_368_residues
MKFIDEYRDPDLVRHLLDAVAALAARVGRRISLMEICGTHTHAIGRFGIRRLLPENIRLISGPGCPVCVTSIHDVDRALY
LADRPHVVFATFGDMLRVPGTGGRSLQRLRAAGADVRIVSSTLDSLRLAEENPEKEVVFMGIGFETTAPTVASAIRKAGL
KGLNNYSVFSVHKTVPQAISALIEDPELSIDGFICPGHVSVITGVDAYKRIPETGRAAVITGFEPVDILEGILMILRQLQ
EGRFEVAIQYARGVNREGNPQALNMMGEVFETREAEWRGLGRIPQSGLFIRERYADFDALRKGNLPEIRSIEFEACRCGE
ILRGVISPEECRLFGKVCTPANPVGPCMVSSEGTCAAYLKYEIHNRKS

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=367, Percent_Identity=43.5967302452316, Blast_Score=313, Evalue=9e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40474; Mature: 40474

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFIDEYRDPDLVRHLLDAVAALAARVGRRISLMEICGTHTHAIGRFGIRRLLPENIRLI
CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHCCHHHHHHHHHHHHHCCCCCEEE
SGPGCPVCVTSIHDVDRALYLADRPHVVFATFGDMLRVPGTGGRSLQRLRAAGADVRIVS
ECCCCCEEEHHHHHHHHHEEECCCCCEEEEECCCCEECCCCCCHHHHHHHHCCCCEEEHH
STLDSLRLAEENPEKEVVFMGIGFETTAPTVASAIRKAGLKGLNNYSVFSVHKTVPQAIS
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
ALIEDPELSIDGFICPGHVSVITGVDAYKRIPETGRAAVITGFEPVDILEGILMILRQLQ
HHHCCCCCCCCCEECCCCHHEEECCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
EGRFEVAIQYARGVNREGNPQALNMMGEVFETREAEWRGLGRIPQSGLFIRERYADFDAL
CCHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHH
RKGNLPEIRSIEFEACRCGEILRGVISPEECRLFGKVCTPANPVGPCMVSSEGTCAAYLK
CCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEE
YEIHNRKS
EEECCCCC
>Mature Secondary Structure
MKFIDEYRDPDLVRHLLDAVAALAARVGRRISLMEICGTHTHAIGRFGIRRLLPENIRLI
CCCHHHCCCHHHHHHHHHHHHHHHHHHCCCEEHHHHHCCHHHHHHHHHHHHHCCCCCEEE
SGPGCPVCVTSIHDVDRALYLADRPHVVFATFGDMLRVPGTGGRSLQRLRAAGADVRIVS
ECCCCCEEEHHHHHHHHHEEECCCCCEEEEECCCCEECCCCCCHHHHHHHHCCCCEEEHH
STLDSLRLAEENPEKEVVFMGIGFETTAPTVASAIRKAGLKGLNNYSVFSVHKTVPQAIS
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
ALIEDPELSIDGFICPGHVSVITGVDAYKRIPETGRAAVITGFEPVDILEGILMILRQLQ
HHHCCCCCCCCCEECCCCHHEEECCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
EGRFEVAIQYARGVNREGNPQALNMMGEVFETREAEWRGLGRIPQSGLFIRERYADFDAL
CCHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHH
RKGNLPEIRSIEFEACRCGEILRGVISPEECRLFGKVCTPANPVGPCMVSSEGTCAAYLK
CCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEEE
YEIHNRKS
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8352644; 12948488 [H]