| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
Click here to switch to the map view.
The map label for this gene is nreB [H]
Identifier: 85860163
GI number: 85860163
Start: 2369464
End: 2371212
Strand: Direct
Name: nreB [H]
Synonym: SYN_00776
Alternate gene names: 85860163
Gene position: 2369464-2371212 (Clockwise)
Preceding gene: 85860161
Following gene: 85860164
Centisome position: 74.53
GC content: 47.74
Gene sequence:
>1749_bases ATGATGATGAAAAATCCCCAAACATACCGACTGCCCTTACTTTCTGAGAGCTGCTCAGTGCGCTCATCGCAGCAGCCGGC TCTGAATTCGGTACAGGATGAGATTCATCCCCTTCTGAAGAAAGCCTTTTCAGAAAATATCCGCAGCAGGGAACATGGAC GGAAGCTGAGGAAAAATCTTCCTTCTGATGAAAATTTATTAAATCGTTATAAAGTATTTTTTGATTCCGCCCCCGTGGGA TGCATCATCATCAACGAAAAGGGCTATATCAGGCATATCAACGGAACCGGCGCTGCCATGTTGAACAGCAGCGATATAAA CCAGCTTCAGGGAAAATCTTTTTTCCGCTTTATTTCCAGGGAAGATCGCCTCATGTTTCTTGCGCATCTGAAGAGCTGCT CCGAAAGCGGAACGAATGAAAACATAGAAGTTCACCTTCGAACCTGGAATCGTCAGCCGCACATTCCCGTGCAGATTCAT ACCGTTTTCCATGACGCTGATCCTGGGAGCAAACCTTTTTTTCTCTCCGTCATAACCAACATCAGCGAACACAAGCAGAT GGAAGAGGCCTTGAGACGCAGTGAGGCCTGTTATCGCCATATCGTGGAAGATCATACGGAAATGATCTGCAGCTGTTTAC GGAACTGGAAAATCACCTTTGTCAACGAAGCCATGTGCAATGTTTTCGGGACACCCCGTGACGAATTTATCGGGATGCCA CTTGTCAAGTTCATCGACAAACAGGATCGGAAAAAAGTAAAGGAACTGCTGGCTTCACTGAATTCTTCCAACCCCATAAA AACCGTGGAACACCGCGTGGTGATGCCCGATGGGCAAAGCCGCTGGCATCGCTGGATTCACAGGGTCATCTATAACCGCA AAGGGCTGTTTGTGGAATATCAATCTGCGGGCCGTGACATAACCGAGCAGAAAGAAACTCAGGAAGCGTTGCTGAAAGCT CACAGCGAACTGGAACAGAAGGTCGGTGAGCGCACAGCTGAACTGGCAAGGATTAATGAAACTCTCAGGGAAGAAATCGC GGAACACAAGGAAACACAGAGAAAATTTCTCGCCAGTCATGAACAGCTCCGGGCACTGACATCTGACTTGATTACAACCG AAGAGAGAGAACGAAGACTCATTGCCACAGAGCTTCACGACCATATCGGTCAGACATTGGCCGTTACCCGGATCAAGCTC GAGATGCTGCATGCGTTAGCGTCATACAGCGGTTTTGCCGAAGCGCTGGAGGAAATTCAAGGTTTTGTCAAGCAGGCCAT CCAGGAAACCCGTTCCCTTATGACAAAATTAAGCCCTCCGGTATTTTACGAACTCGGTTTGACGGCCGCTTTGGAATGGC TGGTCCAGCACTTCGACGAACAGCATAACCTGAAGATTGTTTATAAAGGAATGAGCAATCATTTATCGCTGAAACAGGAT ATTCAAATTCTTCTTCTGCAGGCGACGCGGGAGCTCCTGATGAACGTCGTAAAGCATGCCGGTGTGGAAAAAGCGGAAGT TATCCTAAAAGCCAACAGGAAGCAGATTCAGATCGATGTCATCGATCATGGTTCAGGATTTGACGTATCACAAATCGGAA CACCCGTAGACTGGAGAGGAGGTTTCGGTATCTTCAGCATTCATGAACGATTGAAGAATCTCGGGGGTGAACTCCAGATT CGCTCAAAACGCGGAAAGGGGACACATTTTACCCTTATCGCTCCCCATAACACCAGAGACGGCAATTAA
Upstream 100 bases:
>100_bases GAGTATAAAAATGTTTGAATCATTCATTATCGCGAGTTGACTGTGTATTTCTCGAGATTCATGACGTGTTTCAGAGTTCA GCCTAATTAAGCAAGTTGAA
Downstream 100 bases:
>100_bases AAGGAGAGAGAAAAATGGCTATTACCGTCATACTCGCCGACGATCATAAAATCATTCGTGATGGGCTGCGAACACTAATT GAATCACAACAAGGCATGCA
Product: signal transduction histidine kinase
Products: NA
Alternate protein names: Nitrogen regulation protein B [H]
Number of amino acids: Translated: 582; Mature: 582
Protein sequence:
>582_residues MMMKNPQTYRLPLLSESCSVRSSQQPALNSVQDEIHPLLKKAFSENIRSREHGRKLRKNLPSDENLLNRYKVFFDSAPVG CIIINEKGYIRHINGTGAAMLNSSDINQLQGKSFFRFISREDRLMFLAHLKSCSESGTNENIEVHLRTWNRQPHIPVQIH TVFHDADPGSKPFFLSVITNISEHKQMEEALRRSEACYRHIVEDHTEMICSCLRNWKITFVNEAMCNVFGTPRDEFIGMP LVKFIDKQDRKKVKELLASLNSSNPIKTVEHRVVMPDGQSRWHRWIHRVIYNRKGLFVEYQSAGRDITEQKETQEALLKA HSELEQKVGERTAELARINETLREEIAEHKETQRKFLASHEQLRALTSDLITTEERERRLIATELHDHIGQTLAVTRIKL EMLHALASYSGFAEALEEIQGFVKQAIQETRSLMTKLSPPVFYELGLTAALEWLVQHFDEQHNLKIVYKGMSNHLSLKQD IQILLLQATRELLMNVVKHAGVEKAEVILKANRKQIQIDVIDHGSGFDVSQIGTPVDWRGGFGIFSIHERLKNLGGELQI RSKRGKGTHFTLIAPHNTRDGN
Sequences:
>Translated_582_residues MMMKNPQTYRLPLLSESCSVRSSQQPALNSVQDEIHPLLKKAFSENIRSREHGRKLRKNLPSDENLLNRYKVFFDSAPVG CIIINEKGYIRHINGTGAAMLNSSDINQLQGKSFFRFISREDRLMFLAHLKSCSESGTNENIEVHLRTWNRQPHIPVQIH TVFHDADPGSKPFFLSVITNISEHKQMEEALRRSEACYRHIVEDHTEMICSCLRNWKITFVNEAMCNVFGTPRDEFIGMP LVKFIDKQDRKKVKELLASLNSSNPIKTVEHRVVMPDGQSRWHRWIHRVIYNRKGLFVEYQSAGRDITEQKETQEALLKA HSELEQKVGERTAELARINETLREEIAEHKETQRKFLASHEQLRALTSDLITTEERERRLIATELHDHIGQTLAVTRIKL EMLHALASYSGFAEALEEIQGFVKQAIQETRSLMTKLSPPVFYELGLTAALEWLVQHFDEQHNLKIVYKGMSNHLSLKQD IQILLLQATRELLMNVVKHAGVEKAEVILKANRKQIQIDVIDHGSGFDVSQIGTPVDWRGGFGIFSIHERLKNLGGELQI RSKRGKGTHFTLIAPHNTRDGN >Mature_582_residues MMMKNPQTYRLPLLSESCSVRSSQQPALNSVQDEIHPLLKKAFSENIRSREHGRKLRKNLPSDENLLNRYKVFFDSAPVG CIIINEKGYIRHINGTGAAMLNSSDINQLQGKSFFRFISREDRLMFLAHLKSCSESGTNENIEVHLRTWNRQPHIPVQIH TVFHDADPGSKPFFLSVITNISEHKQMEEALRRSEACYRHIVEDHTEMICSCLRNWKITFVNEAMCNVFGTPRDEFIGMP LVKFIDKQDRKKVKELLASLNSSNPIKTVEHRVVMPDGQSRWHRWIHRVIYNRKGLFVEYQSAGRDITEQKETQEALLKA HSELEQKVGERTAELARINETLREEIAEHKETQRKFLASHEQLRALTSDLITTEERERRLIATELHDHIGQTLAVTRIKL EMLHALASYSGFAEALEEIQGFVKQAIQETRSLMTKLSPPVFYELGLTAALEWLVQHFDEQHNLKIVYKGMSNHLSLKQD IQILLLQATRELLMNVVKHAGVEKAEVILKANRKQIQIDVIDHGSGFDVSQIGTPVDWRGGFGIFSIHERLKNLGGELQI RSKRGKGTHFTLIAPHNTRDGN
Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxyg
COG id: COG4585
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1788812, Length=202, Percent_Identity=28.7128712871287, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR004358 - InterPro: IPR011712 - InterPro: IPR005467 - InterPro: IPR017203 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 66887; Mature: 66887
Theoretical pI: Translated: 8.81; Mature: 8.81
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMMKNPQTYRLPLLSESCSVRSSQQPALNSVQDEIHPLLKKAFSENIRSREHGRKLRKNL CCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PSDENLLNRYKVFFDSAPVGCIIINEKGYIRHINGTGAAMLNSSDINQLQGKSFFRFISR CCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCC EDRLMFLAHLKSCSESGTNENIEVHLRTWNRQPHIPVQIHTVFHDADPGSKPFFLSVITN CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHC ISEHKQMEEALRRSEACYRHIVEDHTEMICSCLRNWKITFVNEAMCNVFGTPRDEFIGMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCHHHHCCCH LVKFIDKQDRKKVKELLASLNSSNPIKTVEHRVVMPDGQSRWHRWIHRVIYNRKGLFVEY HHHHHCHHHHHHHHHHHHHCCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHCCCCCEEEE QSAGRDITEQKETQEALLKAHSELEQKVGERTAELARINETLREEIAEHKETQRKFLASH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQLRALTSDLITTEERERRLIATELHDHIGQTLAVTRIKLEMLHALASYSGFAEALEEIQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFVKQAIQETRSLMTKLSPPVFYELGLTAALEWLVQHFDEQHNLKIVYKGMSNHLSLKQD HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH IQILLLQATRELLMNVVKHAGVEKAEVILKANRKQIQIDVIDHGSGFDVSQIGTPVDWRG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCCCCCC GFGIFSIHERLKNLGGELQIRSKRGKGTHFTLIAPHNTRDGN CCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCC >Mature Secondary Structure MMMKNPQTYRLPLLSESCSVRSSQQPALNSVQDEIHPLLKKAFSENIRSREHGRKLRKNL CCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PSDENLLNRYKVFFDSAPVGCIIINEKGYIRHINGTGAAMLNSSDINQLQGKSFFRFISR CCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCC EDRLMFLAHLKSCSESGTNENIEVHLRTWNRQPHIPVQIHTVFHDADPGSKPFFLSVITN CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHC ISEHKQMEEALRRSEACYRHIVEDHTEMICSCLRNWKITFVNEAMCNVFGTPRDEFIGMP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCHHHHCCCH LVKFIDKQDRKKVKELLASLNSSNPIKTVEHRVVMPDGQSRWHRWIHRVIYNRKGLFVEY HHHHHCHHHHHHHHHHHHHCCCCCCCCHHHCEEECCCCHHHHHHHHHHHHHCCCCCEEEE QSAGRDITEQKETQEALLKAHSELEQKVGERTAELARINETLREEIAEHKETQRKFLASH CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EQLRALTSDLITTEERERRLIATELHDHIGQTLAVTRIKLEMLHALASYSGFAEALEEIQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFVKQAIQETRSLMTKLSPPVFYELGLTAALEWLVQHFDEQHNLKIVYKGMSNHLSLKQD HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH IQILLLQATRELLMNVVKHAGVEKAEVILKANRKQIQIDVIDHGSGFDVSQIGTPVDWRG HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCCCCCC GFGIFSIHERLKNLGGELQIRSKRGKGTHFTLIAPHNTRDGN CCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA