| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85859883
Identifier: 85859883
GI number: 85859883
Start: 2116066
End: 2118213
Strand: Direct
Name: 85859883
Synonym: SYN_00496
Alternate gene names: NA
Gene position: 2116066-2118213 (Clockwise)
Preceding gene: 85859882
Following gene: 85859884
Centisome position: 66.56
GC content: 29.93
Gene sequence:
>2148_bases ATGCAGAAATTACACATCACGTTCGAAAATTGTTACGGGATAAAGAGACTAGAAAAAGAGTTTAATTTTTCAAGGAAAAA CACTTTTGCGATTTATGCACCTAACGGTGTAATGAAAACTTCTTTCGCTAAATCGTTTAAAGACCTTAGTACCGGAAAAG ATTCTCGGGACTTAGTTTTTCCTGACAGAGAAAATTTACGAAATATTAAAGATGAAACCGATGCTGATATAAAACCTGAA GCGGTTTTTGTAATAGAACCATATAATGAGCAATTTAATTCTGATAAATTATCAACTCTCTTAATTAAGAGAGAATTGAA AGAAGAATACGACGATATATACAAAAATATAGAGTTAGAAAAAAATAACTTCATTAAAAAATTGAAAGGAATTTCACAAA GTTCCGATTGCGAATCCGAGTTAACCGCTACGTTTACTGAAAACCCTAAAGAAAGTCTATTTGATCTGTTGAGTAAAATT AATGAGAAGCTTGATGGATTACATACAAAATTTTCTTTTAGATATAATGATGTCTTTGATAAAAAAGGGAATGTAAAGAA GTTTTTAGATAAAAATAGTGCTGTACTTGATTCTTACATAGAAAATTACGAAAAAATAATTTCAAAATCTAGTTTTTTCA AAAAATCAGATAATACATTTGGCACATATCAGGCGGGAGAAATGCTGAAATCTGTGTCAGACAACTCCTTTTTCGAGGCT GGTCATAATCTGCAACTTTTAGATAATACAAAAATTGATTCGGCTGATACTTTTAAGAATTTACTCGAAGAAGAAATAAA TAAGGTTGTAAATGATAAGAATTTAAAGAAAATATTCGACAAAGTAGATACTGCTATTGGTTCAAATGCCGAACTTCGTG CATTTAAAGTAGTAATTGAAAAAGACAATTCATTACTAATCGAACTTAAAGATTATGAAAATTTCCGAAAAAAAGTATGG CAAGGATATTTGGATCAGTTAAAAAATGATTTAGAAGAATTATTGAAATTCTACGATTCAAAAAAAATACTGTTGGAAGA CATAGTTTCAAGGGCAAAAAAAGAGGAAACTGATTGGGAAAAGGCTATCGAAACTTTCAATAAACGATTCAGCGGTTTAC CGTTTAAGCTTTCGATGGATAATAAGGAAGATGTATTATTAAAAACAAGCACTCCATCTGTAGAATTTATTTTTTTTGAT AATCAAGAAGAAAGAAAAGTTGAAAGGGCTGAATTGCTGTCTGTATTGAGTCAAGGAGAAAGAAGAGCTTTATATCTTTT GAATATAATATTTGAAGTACAGGCAAGAAAAAAAATAAATCAAGAAACCCTTCTCATTATCGATGATATAGCTGATTCTT TTGATTACAAGAATAAATACGCAATAATCGAATATTTAAGCGACATTTCAGAAGACTCGAATTTCAAACAAATAATTTTA ACTCATAATTTCGATTTTTTCAGAACGGTTCAAAGTCGATTTATTCCATACAATCATTGCATGATGGTGGAAAAAACTGA TGACGAAATTAAGGTTGAGAAAGCAGCATATATAAGAAATCCATTTAAATATTGGATGAGCAATTTAAGTGATGGAAAAA AGCTAATTGCTTCAATACCGTTCGTTAGAAACATTATTGAATACACAAAAGGAGATAGTGATCCAAACTTTTTAAGGCTT ACATCCCTTTTACATCTAAAATCCGATACGGAATCTATCCAAAGAAGCGATTTACAAGATATTTATAATGATATTTTCCC AAACTTATCATTGTCTATAAGTGATGGAAGTGAAAAGGTTATTGATAATATTTTTGATTTAGCGGACTGTTGTTTGACTG CGACAGAAAGCATAAACCTTGAAAACAAGATACTTCTTTCTATTGCTATCAGGCTAAAAGCAGAGGAATTTATCTTAAGC AAAATAACTGATAAAAGTGAGATTGAAGGAAATCAAACAAGAAAACTGTTTGAAAGATTTAAAACGGAATATGGCAGTAC AGAGCAAGAAAAAGTAGAATTATTGGAACAGGTAAACCTCATGACTCCTGAAAACATTCATTTTAATTCATTTATGTATG AGCCAATTCTAGATATGTCTGACATACAATTAAAAAGCCTGTATGAAGACACAAAAAATAAACTATGA
Upstream 100 bases:
>100_bases ATAACGATTTTCAAATCAACACTCTTTCAAAAATCCGCGATACTCTCTTACCCAAACTGATGAAAGGAGAAATAAGAGTA GCTAGTTTCAATAATTAATT
Downstream 100 bases:
>100_bases CCAAACTATTTGAATCCGACGTCGAAGAATTCGTCATTGAGCTGTTGCAAAACCAAGACTTTGAGTATCTGTCCCCTGAA CAGCAGGAAAATGAACGCGA
Product: cytoplasmic protein
Products: NA
Alternate protein names: Macrophage Infection Protein MimD
Number of amino acids: Translated: 715; Mature: 715
Protein sequence:
>715_residues MQKLHITFENCYGIKRLEKEFNFSRKNTFAIYAPNGVMKTSFAKSFKDLSTGKDSRDLVFPDRENLRNIKDETDADIKPE AVFVIEPYNEQFNSDKLSTLLIKRELKEEYDDIYKNIELEKNNFIKKLKGISQSSDCESELTATFTENPKESLFDLLSKI NEKLDGLHTKFSFRYNDVFDKKGNVKKFLDKNSAVLDSYIENYEKIISKSSFFKKSDNTFGTYQAGEMLKSVSDNSFFEA GHNLQLLDNTKIDSADTFKNLLEEEINKVVNDKNLKKIFDKVDTAIGSNAELRAFKVVIEKDNSLLIELKDYENFRKKVW QGYLDQLKNDLEELLKFYDSKKILLEDIVSRAKKEETDWEKAIETFNKRFSGLPFKLSMDNKEDVLLKTSTPSVEFIFFD NQEERKVERAELLSVLSQGERRALYLLNIIFEVQARKKINQETLLIIDDIADSFDYKNKYAIIEYLSDISEDSNFKQIIL THNFDFFRTVQSRFIPYNHCMMVEKTDDEIKVEKAAYIRNPFKYWMSNLSDGKKLIASIPFVRNIIEYTKGDSDPNFLRL TSLLHLKSDTESIQRSDLQDIYNDIFPNLSLSISDGSEKVIDNIFDLADCCLTATESINLENKILLSIAIRLKAEEFILS KITDKSEIEGNQTRKLFERFKTEYGSTEQEKVELLEQVNLMTPENIHFNSFMYEPILDMSDIQLKSLYEDTKNKL
Sequences:
>Translated_715_residues MQKLHITFENCYGIKRLEKEFNFSRKNTFAIYAPNGVMKTSFAKSFKDLSTGKDSRDLVFPDRENLRNIKDETDADIKPE AVFVIEPYNEQFNSDKLSTLLIKRELKEEYDDIYKNIELEKNNFIKKLKGISQSSDCESELTATFTENPKESLFDLLSKI NEKLDGLHTKFSFRYNDVFDKKGNVKKFLDKNSAVLDSYIENYEKIISKSSFFKKSDNTFGTYQAGEMLKSVSDNSFFEA GHNLQLLDNTKIDSADTFKNLLEEEINKVVNDKNLKKIFDKVDTAIGSNAELRAFKVVIEKDNSLLIELKDYENFRKKVW QGYLDQLKNDLEELLKFYDSKKILLEDIVSRAKKEETDWEKAIETFNKRFSGLPFKLSMDNKEDVLLKTSTPSVEFIFFD NQEERKVERAELLSVLSQGERRALYLLNIIFEVQARKKINQETLLIIDDIADSFDYKNKYAIIEYLSDISEDSNFKQIIL THNFDFFRTVQSRFIPYNHCMMVEKTDDEIKVEKAAYIRNPFKYWMSNLSDGKKLIASIPFVRNIIEYTKGDSDPNFLRL TSLLHLKSDTESIQRSDLQDIYNDIFPNLSLSISDGSEKVIDNIFDLADCCLTATESINLENKILLSIAIRLKAEEFILS KITDKSEIEGNQTRKLFERFKTEYGSTEQEKVELLEQVNLMTPENIHFNSFMYEPILDMSDIQLKSLYEDTKNKL >Mature_715_residues MQKLHITFENCYGIKRLEKEFNFSRKNTFAIYAPNGVMKTSFAKSFKDLSTGKDSRDLVFPDRENLRNIKDETDADIKPE AVFVIEPYNEQFNSDKLSTLLIKRELKEEYDDIYKNIELEKNNFIKKLKGISQSSDCESELTATFTENPKESLFDLLSKI NEKLDGLHTKFSFRYNDVFDKKGNVKKFLDKNSAVLDSYIENYEKIISKSSFFKKSDNTFGTYQAGEMLKSVSDNSFFEA GHNLQLLDNTKIDSADTFKNLLEEEINKVVNDKNLKKIFDKVDTAIGSNAELRAFKVVIEKDNSLLIELKDYENFRKKVW QGYLDQLKNDLEELLKFYDSKKILLEDIVSRAKKEETDWEKAIETFNKRFSGLPFKLSMDNKEDVLLKTSTPSVEFIFFD NQEERKVERAELLSVLSQGERRALYLLNIIFEVQARKKINQETLLIIDDIADSFDYKNKYAIIEYLSDISEDSNFKQIIL THNFDFFRTVQSRFIPYNHCMMVEKTDDEIKVEKAAYIRNPFKYWMSNLSDGKKLIASIPFVRNIIEYTKGDSDPNFLRL TSLLHLKSDTESIQRSDLQDIYNDIFPNLSLSISDGSEKVIDNIFDLADCCLTATESINLENKILLSIAIRLKAEEFILS KITDKSEIEGNQTRKLFERFKTEYGSTEQEKVELLEQVNLMTPENIHFNSFMYEPILDMSDIQLKSLYEDTKNKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83423; Mature: 83423
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKLHITFENCYGIKRLEKEFNFSRKNTFAIYAPNGVMKTSFAKSFKDLSTGKDSRDLVF CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC PDRENLRNIKDETDADIKPEAVFVIEPYNEQFNSDKLSTLLIKRELKEEYDDIYKNIELE CCHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC KNNFIKKLKGISQSSDCESELTATFTENPKESLFDLLSKINEKLDGLHTKFSFRYNDVFD HHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECHHHC KKGNVKKFLDKNSAVLDSYIENYEKIISKSSFFKKSDNTFGTYQAGEMLKSVSDNSFFEA CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHC GHNLQLLDNTKIDSADTFKNLLEEEINKVVNDKNLKKIFDKVDTAIGSNAELRAFKVVIE CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEE KDNSLLIELKDYENFRKKVWQGYLDQLKNDLEELLKFYDSKKILLEDIVSRAKKEETDWE CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH KAIETFNKRFSGLPFKLSMDNKEDVLLKTSTPSVEFIFFDNQEERKVERAELLSVLSQGE HHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCC RRALYLLNIIFEVQARKKINQETLLIIDDIADSFDYKNKYAIIEYLSDISEDSNFKQIIL CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEE THNFDFFRTVQSRFIPYNHCMMVEKTDDEIKVEKAAYIRNPFKYWMSNLSDGKKLIASIP ECCCHHHHHHHHHCCCCHHEEEEEECCCHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHH FVRNIIEYTKGDSDPNFLRLTSLLHLKSDTESIQRSDLQDIYNDIFPNLSLSISDGSEKV HHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH IDNIFDLADCCLTATESINLENKILLSIAIRLKAEEFILSKITDKSEIEGNQTRKLFERF HHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHH KTEYGSTEQEKVELLEQVNLMTPENIHFNSFMYEPILDMSDIQLKSLYEDTKNKL HHHCCCCHHHHHHHHHHHCCCCCCCCEECCEECCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MQKLHITFENCYGIKRLEKEFNFSRKNTFAIYAPNGVMKTSFAKSFKDLSTGKDSRDLVF CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCC PDRENLRNIKDETDADIKPEAVFVIEPYNEQFNSDKLSTLLIKRELKEEYDDIYKNIELE CCHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC KNNFIKKLKGISQSSDCESELTATFTENPKESLFDLLSKINEKLDGLHTKFSFRYNDVFD HHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECHHHC KKGNVKKFLDKNSAVLDSYIENYEKIISKSSFFKKSDNTFGTYQAGEMLKSVSDNSFFEA CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHC GHNLQLLDNTKIDSADTFKNLLEEEINKVVNDKNLKKIFDKVDTAIGSNAELRAFKVVIE CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEE KDNSLLIELKDYENFRKKVWQGYLDQLKNDLEELLKFYDSKKILLEDIVSRAKKEETDWE CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH KAIETFNKRFSGLPFKLSMDNKEDVLLKTSTPSVEFIFFDNQEERKVERAELLSVLSQGE HHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCC RRALYLLNIIFEVQARKKINQETLLIIDDIADSFDYKNKYAIIEYLSDISEDSNFKQIIL CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEE THNFDFFRTVQSRFIPYNHCMMVEKTDDEIKVEKAAYIRNPFKYWMSNLSDGKKLIASIP ECCCHHHHHHHHHCCCCHHEEEEEECCCHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHH FVRNIIEYTKGDSDPNFLRLTSLLHLKSDTESIQRSDLQDIYNDIFPNLSLSISDGSEKV HHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH IDNIFDLADCCLTATESINLENKILLSIAIRLKAEEFILSKITDKSEIEGNQTRKLFERF HHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHH KTEYGSTEQEKVELLEQVNLMTPENIHFNSFMYEPILDMSDIQLKSLYEDTKNKL HHHCCCCHHHHHHHHHHHCCCCCCCCEECCEECCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA