| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is gcdA [H]
Identifier: 85859866
GI number: 85859866
Start: 2098959
End: 2100731
Strand: Direct
Name: gcdA [H]
Synonym: SYN_00481
Alternate gene names: 85859866
Gene position: 2098959-2100731 (Clockwise)
Preceding gene: 85859865
Following gene: 85859875
Centisome position: 66.02
GC content: 53.13
Gene sequence:
>1773_bases ATGAGACAATACTTTGAAAAGATGGACGATCTGGGCAAGCCCCTGAAACCCGCTCAGATTGAAAGAATGAAGGAAAACGT TGCACAGATTGAGGAAGTGTATGCAGAAGTCGCAGCGGAATTCGAAAAGGCAAAAAATGCAGGCGTTCCCGCCGAGGATG TCCACAAAAAAGGCGAAATGACCGTATGGGATCGTATCGAATACATCGTGGATCCCGGTACGTTCTGTCCGCTCCACACC CTTTTCAATCCCGCAGGAAATAAAGAGGGCGTGACGGGCGTCATCGATGGTCTTGCCCGAATCAGCGGCAAATGGTGCGT CCTGATCGGATTTGACAACAAGGTTACTGTGGGCGCCTGGATTCCCGGTCAGCCGGAAAACAACCTCCGTGCCACCGATA TGGCCAAGATCCTCAATATTCCCATAGTCTGGCTGGTCAACTGCTCCGGTGCGAGACTGCCCGAGCAGCATAAATTCTAT GCCAACCGCCGCGGCAGTGGGACCTGCTTCTTCCGCCACGCGGAACTGGAAACGCTGGGGATTCCCGTCCTAGCGGGGAT TTACGGAACGAATCCGGCCGGCGGCGGCTATCAGGGAATCAGCCCGACCATTCTTCTCGCTCACAAAAACTGCAACATCG CCGTGGGTGGCGCAGGCATCGTCAGCGGCATGTCCCCCAAGGGATTCTTCGATGAAGAAATAGCTGAAGCGCTTATCGAA GCAACGCGCAAGTTCAGGGCAACTCCTCCAGGAAGAGTCGCGATTCATCATGATGTGACCGGATTCTTCCGCGCAGTCTA TGAGGAGGAAACAGGTGTCCTGGATGGATTGAAGCAGTACATGGCTGAAATGCCGGCTTATAATCCCCGTTTCTTCCGGG TTGCCCAGCCTGCAGAACCCAAGTACGATCCCAAGGAAATCTCTTCCATCATCACCTTCAACCAGAAGATGGTTTATGAT TTCGATAATATTCTGGCCCGTCTGGTGGACAATTCCGAGCATATGGAATTCCGTCCCGGTTTCGGACCTGAGGTTTACAC CGGTCTGGTCAAGATCGACGGCTTCCTGATCGGCGCCATCGGCAACCGTCATGGTGTTCTGCCCAACTACCCGGAATATA CCAATGAGTACATCGGGGTGGGAGGAAAGCTGTATCGCCAGGGTCTGATCAAGATGAGCGAGTTTGTCTCCCTCTGTGAT CGTGATCGTATTCCCATTGTGTGGTTCCAGGATACTTCAGGAATCGACGTTGGCGACATCGCGGAAAAAGCGGAACTTCT CGGGCTGGGTCAGGCTCTTATTTATTCCATCGAGCAGACGAAACTTCCCATGATGCTGACGGTCCTCCGCAAGGGATCGG CAGCGGCCCATTACGTCATGGGCGGCCCCACGGCCAATAACCACACGGCCTTTACGCTGGGCACGGCTACGACGGAAATT TACGTCATGCACGGCGAAACCGCGGCAACAGCCAGTTTTGCCCGCAGACTGGTCAAGGAAAAGGATGCCGGCAAGTCCCT GCAGCCTGTCCTTGATAAGATGAATCAGTTGGCAAAGGAATACTATAACAACTCACGTCCGGTATACTGTGCCCAGCAGG GTTTGGTGGACGAAATCGTTCGTTACGAAGACATCCGCAAATACCTGGTCGCATTTGCCAATGCAGTGTATCAGAATCCG AAATCCATCTGCCCGCAGCATCACTTGATTCTGCCGCGGATTATCCGTTCTGAGATTGTTAAAGGATTGCCCAGACCAGC AAAAGAAGCATAA
Upstream 100 bases:
>100_bases GGCGGAGCTCTGCTGGCCCAGAAATAACCCATAAACCGAGGTTTTCTGACCTCTGTTACGTTACATGTTACAGTGCAGAT TTACTGGAGGATAGTTATTC
Downstream 100 bases:
>100_bases ATAAGGACTAACACCCCTTATCTGGTCATTGAGTAACTAAAGAAGGCCGAAGCGTGAATTCTTCATGCTTCGGCCTTTTA CATTCCCTTTTCGTCCGTCT
Product: glutaconyl-CoA decarboxylasesubunit A
Products: NA
Alternate protein names: Carboxyltransferase [H]
Number of amino acids: Translated: 590; Mature: 590
Protein sequence:
>590_residues MRQYFEKMDDLGKPLKPAQIERMKENVAQIEEVYAEVAAEFEKAKNAGVPAEDVHKKGEMTVWDRIEYIVDPGTFCPLHT LFNPAGNKEGVTGVIDGLARISGKWCVLIGFDNKVTVGAWIPGQPENNLRATDMAKILNIPIVWLVNCSGARLPEQHKFY ANRRGSGTCFFRHAELETLGIPVLAGIYGTNPAGGGYQGISPTILLAHKNCNIAVGGAGIVSGMSPKGFFDEEIAEALIE ATRKFRATPPGRVAIHHDVTGFFRAVYEEETGVLDGLKQYMAEMPAYNPRFFRVAQPAEPKYDPKEISSIITFNQKMVYD FDNILARLVDNSEHMEFRPGFGPEVYTGLVKIDGFLIGAIGNRHGVLPNYPEYTNEYIGVGGKLYRQGLIKMSEFVSLCD RDRIPIVWFQDTSGIDVGDIAEKAELLGLGQALIYSIEQTKLPMMLTVLRKGSAAAHYVMGGPTANNHTAFTLGTATTEI YVMHGETAATASFARRLVKEKDAGKSLQPVLDKMNQLAKEYYNNSRPVYCAQQGLVDEIVRYEDIRKYLVAFANAVYQNP KSICPQHHLILPRIIRSEIVKGLPRPAKEA
Sequences:
>Translated_590_residues MRQYFEKMDDLGKPLKPAQIERMKENVAQIEEVYAEVAAEFEKAKNAGVPAEDVHKKGEMTVWDRIEYIVDPGTFCPLHT LFNPAGNKEGVTGVIDGLARISGKWCVLIGFDNKVTVGAWIPGQPENNLRATDMAKILNIPIVWLVNCSGARLPEQHKFY ANRRGSGTCFFRHAELETLGIPVLAGIYGTNPAGGGYQGISPTILLAHKNCNIAVGGAGIVSGMSPKGFFDEEIAEALIE ATRKFRATPPGRVAIHHDVTGFFRAVYEEETGVLDGLKQYMAEMPAYNPRFFRVAQPAEPKYDPKEISSIITFNQKMVYD FDNILARLVDNSEHMEFRPGFGPEVYTGLVKIDGFLIGAIGNRHGVLPNYPEYTNEYIGVGGKLYRQGLIKMSEFVSLCD RDRIPIVWFQDTSGIDVGDIAEKAELLGLGQALIYSIEQTKLPMMLTVLRKGSAAAHYVMGGPTANNHTAFTLGTATTEI YVMHGETAATASFARRLVKEKDAGKSLQPVLDKMNQLAKEYYNNSRPVYCAQQGLVDEIVRYEDIRKYLVAFANAVYQNP KSICPQHHLILPRIIRSEIVKGLPRPAKEA >Mature_590_residues MRQYFEKMDDLGKPLKPAQIERMKENVAQIEEVYAEVAAEFEKAKNAGVPAEDVHKKGEMTVWDRIEYIVDPGTFCPLHT LFNPAGNKEGVTGVIDGLARISGKWCVLIGFDNKVTVGAWIPGQPENNLRATDMAKILNIPIVWLVNCSGARLPEQHKFY ANRRGSGTCFFRHAELETLGIPVLAGIYGTNPAGGGYQGISPTILLAHKNCNIAVGGAGIVSGMSPKGFFDEEIAEALIE ATRKFRATPPGRVAIHHDVTGFFRAVYEEETGVLDGLKQYMAEMPAYNPRFFRVAQPAEPKYDPKEISSIITFNQKMVYD FDNILARLVDNSEHMEFRPGFGPEVYTGLVKIDGFLIGAIGNRHGVLPNYPEYTNEYIGVGGKLYRQGLIKMSEFVSLCD RDRIPIVWFQDTSGIDVGDIAEKAELLGLGQALIYSIEQTKLPMMLTVLRKGSAAAHYVMGGPTANNHTAFTLGTATTEI YVMHGETAATASFARRLVKEKDAGKSLQPVLDKMNQLAKEYYNNSRPVYCAQQGLVDEIVRYEDIRKYLVAFANAVYQNP KSICPQHHLILPRIIRSEIVKGLPRPAKEA
Specific function: Decarboxylase subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD) [H]
COG id: COG4799
COG function: function code I; Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 carboxyltransferase domain [H]
Homologues:
Organism=Homo sapiens, GI11545863, Length=535, Percent_Identity=24.2990654205607, Blast_Score=133, Evalue=4e-31, Organism=Homo sapiens, GI119943100, Length=504, Percent_Identity=22.0238095238095, Blast_Score=110, Evalue=3e-24, Organism=Homo sapiens, GI295821216, Length=524, Percent_Identity=21.5648854961832, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17552936, Length=547, Percent_Identity=26.3254113345521, Blast_Score=163, Evalue=2e-40, Organism=Caenorhabditis elegans, GI25147362, Length=550, Percent_Identity=20.5454545454545, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI25147359, Length=543, Percent_Identity=20.6261510128913, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI24586065, Length=504, Percent_Identity=23.8095238095238, Blast_Score=141, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000022 - InterPro: IPR011763 - InterPro: IPR011762 [H]
Pfam domain/function: PF01039 Carboxyl_trans [H]
EC number: =4.1.1.70 [H]
Molecular weight: Translated: 65368; Mature: 65368
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS00445 FGGY_KINASES_2 ; PS50980 COA_CT_NTER ; PS50989 COA_CT_CTER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQYFEKMDDLGKPLKPAQIERMKENVAQIEEVYAEVAAEFEKAKNAGVPAEDVHKKGEM CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC TVWDRIEYIVDPGTFCPLHTLFNPAGNKEGVTGVIDGLARISGKWCVLIGFDNKVTVGAW CHHHHHHHEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEE IPGQPENNLRATDMAKILNIPIVWLVNCSGARLPEQHKFYANRRGSGTCFFRHAELETLG CCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCHHHHC IPVLAGIYGTNPAGGGYQGISPTILLAHKNCNIAVGGAGIVSGMSPKGFFDEEIAEALIE CHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCHHHCCCCCCCCCHHHHHHHHHH ATRKFRATPPGRVAIHHDVTGFFRAVYEEETGVLDGLKQYMAEMPAYNPRFFRVAQPAEP HHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCC KYDPKEISSIITFNQKMVYDFDNILARLVDNSEHMEFRPGFGPEVYTGLVKIDGFLIGAI CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHEEECCEEEEEC GNRHGVLPNYPEYTNEYIGVGGKLYRQGLIKMSEFVSLCDRDRIPIVWFQDTSGIDVGDI CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH AEKAELLGLGQALIYSIEQTKLPMMLTVLRKGSAAAHYVMGGPTANNHTAFTLGTATTEI HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEEE YVMHGETAATASFARRLVKEKDAGKSLQPVLDKMNQLAKEYYNNSRPVYCAQQGLVDEIV EEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH RYEDIRKYLVAFANAVYQNPKSICPQHHLILPRIIRSEIVKGLPRPAKEA HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MRQYFEKMDDLGKPLKPAQIERMKENVAQIEEVYAEVAAEFEKAKNAGVPAEDVHKKGEM CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC TVWDRIEYIVDPGTFCPLHTLFNPAGNKEGVTGVIDGLARISGKWCVLIGFDNKVTVGAW CHHHHHHHEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEE IPGQPENNLRATDMAKILNIPIVWLVNCSGARLPEQHKFYANRRGSGTCFFRHAELETLG CCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCHHHHC IPVLAGIYGTNPAGGGYQGISPTILLAHKNCNIAVGGAGIVSGMSPKGFFDEEIAEALIE CHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCHHHCCCCCCCCCHHHHHHHHHH ATRKFRATPPGRVAIHHDVTGFFRAVYEEETGVLDGLKQYMAEMPAYNPRFFRVAQPAEP HHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEECCCCC KYDPKEISSIITFNQKMVYDFDNILARLVDNSEHMEFRPGFGPEVYTGLVKIDGFLIGAI CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHEEECCEEEEEC GNRHGVLPNYPEYTNEYIGVGGKLYRQGLIKMSEFVSLCDRDRIPIVWFQDTSGIDVGDI CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH AEKAELLGLGQALIYSIEQTKLPMMLTVLRKGSAAAHYVMGGPTANNHTAFTLGTATTEI HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEEE YVMHGETAATASFARRLVKEKDAGKSLQPVLDKMNQLAKEYYNNSRPVYCAQQGLVDEIV EEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHH RYEDIRKYLVAFANAVYQNPKSICPQHHLILPRIIRSEIVKGLPRPAKEA HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8382157; 8365476; 7607244 [H]