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The map label for this gene is cydB [H]

Identifier: 85859711

GI number: 85859711

Start: 1943446

End: 1944471

Strand: Direct

Name: cydB [H]

Synonym: SYN_01975

Alternate gene names: 85859711

Gene position: 1943446-1944471 (Clockwise)

Preceding gene: 85859710

Following gene: 85859712

Centisome position: 61.13

GC content: 54.48

Gene sequence:

>1026_bases
ATGGATTATCAGCTGATCTGGTTTGTTCTCTGGGGACTTCTCTGGGCCGCATATTTTGCCACCGGCGGTTTCGATCTGGG
GGCGGGAATGCTTCTTCCCGGGCTGGGAAAAACGGAACACGAAAAAGAGGCACTTCTGGAAAGTTTCGGTCCGCTGTGGA
ACGGCAACGAAGTCTGGCTGGTCACGGCGGGCGGCGCAACCTTCGCCGCCTTCCCCACCGCTTACGCCGTACTCTTCAGT
TCCTTTTACATTCCCCTTCTGTTGATTCTCTTCGCCCTGATTGTCCGGGGCGTCGCTCTGGAATTTCGGGAAAAACTCGC
GTCGCAGTCCTGGCGAAAGGCTTGCGATACCGCCATCGTAACGGGAAGTGTCGTTCCGGCCTTCCTCTTCGGCGTTTTTT
TCGGCAATGTCTTTCAGGGATTGCCCCTGGATGACCGGGGGTACAGCGGGACCTTTCTTCAGCTTCTCAATCCTTACACC
CTCCTGGCAGGGATTCTTTTCTGTGTCCTTTTCCTCTCCCACGGCGCCCTCTGGATCGCCTACCGAACGGAGGGTGATCT
GTCCATGCGGGCGGCAACCTTCGCTCGAAACTACTGGCCCGCTGTTGCCCTGGCCGTGATCCTTTTCTTCATTTCCTCTA
TCTTCAAGACGCAGCTTTTCGCAAATTATCTCCAGAACGCCCTTCTGTTCCTCTTTCCTGTCCTGTCGCTGCTTTCCCTT
GCCGCTCTGAGGTTTTACCTGAAGAAGTCGGAATTTCTCTCAGCTTTTCTATTTTCCGGATTGAATATCATCCTGGTCAT
GGCAACCGCCCTGGCCGGCCTGTATCCGAACCTGCTTCCCTCGCTCTCCAATCCCTCCTTCAGCATCACGATTTTCAATG
CCTCCTCAGGCCTTTACACTCTGAAGATCATGACCGTGGCCGCCGCTGTCTTTGTCCCCATCATTCTCGTCTATCAGTTA
TGGGTTTACCGGATATTCCGGCATAAAATCCCCGCCGCGAGGACGGGAGAAGATCTGTACCTTTAA

Upstream 100 bases:

>100_bases
GGGCTGTGTCTGATGATCTACCACATCAGGAAAGGCCCGGAACCTGAAGCGACCGAGCCAGGCGCCTCTTCTTAAACAGC
AGAACGGGAGGTACGACATC

Downstream 100 bases:

>100_bases
GCACAGCGGCCTTTTTAGACAGCAGATCTTTATAATGCAGATGATGCTGAATTTTTTTAAAAATTTATATGAATAAGGAG
GAATGAACGATGTTCAAGGA

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MDYQLIWFVLWGLLWAAYFATGGFDLGAGMLLPGLGKTEHEKEALLESFGPLWNGNEVWLVTAGGATFAAFPTAYAVLFS
SFYIPLLLILFALIVRGVALEFREKLASQSWRKACDTAIVTGSVVPAFLFGVFFGNVFQGLPLDDRGYSGTFLQLLNPYT
LLAGILFCVLFLSHGALWIAYRTEGDLSMRAATFARNYWPAVALAVILFFISSIFKTQLFANYLQNALLFLFPVLSLLSL
AALRFYLKKSEFLSAFLFSGLNIILVMATALAGLYPNLLPSLSNPSFSITIFNASSGLYTLKIMTVAAAVFVPIILVYQL
WVYRIFRHKIPAARTGEDLYL

Sequences:

>Translated_341_residues
MDYQLIWFVLWGLLWAAYFATGGFDLGAGMLLPGLGKTEHEKEALLESFGPLWNGNEVWLVTAGGATFAAFPTAYAVLFS
SFYIPLLLILFALIVRGVALEFREKLASQSWRKACDTAIVTGSVVPAFLFGVFFGNVFQGLPLDDRGYSGTFLQLLNPYT
LLAGILFCVLFLSHGALWIAYRTEGDLSMRAATFARNYWPAVALAVILFFISSIFKTQLFANYLQNALLFLFPVLSLLSL
AALRFYLKKSEFLSAFLFSGLNIILVMATALAGLYPNLLPSLSNPSFSITIFNASSGLYTLKIMTVAAAVFVPIILVYQL
WVYRIFRHKIPAARTGEDLYL
>Mature_341_residues
MDYQLIWFVLWGLLWAAYFATGGFDLGAGMLLPGLGKTEHEKEALLESFGPLWNGNEVWLVTAGGATFAAFPTAYAVLFS
SFYIPLLLILFALIVRGVALEFREKLASQSWRKACDTAIVTGSVVPAFLFGVFFGNVFQGLPLDDRGYSGTFLQLLNPYT
LLAGILFCVLFLSHGALWIAYRTEGDLSMRAATFARNYWPAVALAVILFFISSIFKTQLFANYLQNALLFLFPVLSLLSL
AALRFYLKKSEFLSAFLFSGLNIILVMATALAGLYPNLLPSLSNPSFSITIFNASSGLYTLKIMTVAAAVFVPIILVYQL
WVYRIFRHKIPAARTGEDLYL

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=387, Percent_Identity=33.5917312661499, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1787213, Length=374, Percent_Identity=31.8181818181818, Blast_Score=186, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37791; Mature: 37791

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYQLIWFVLWGLLWAAYFATGGFDLGAGMLLPGLGKTEHEKEALLESFGPLWNGNEVWL
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
VTAGGATFAAFPTAYAVLFSSFYIPLLLILFALIVRGVALEFREKLASQSWRKACDTAIV
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGSVVPAFLFGVFFGNVFQGLPLDDRGYSGTFLQLLNPYTLLAGILFCVLFLSHGALWIA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCEEEE
YRTEGDLSMRAATFARNYWPAVALAVILFFISSIFKTQLFANYLQNALLFLFPVLSLLSL
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALRFYLKKSEFLSAFLFSGLNIILVMATALAGLYPNLLPSLSNPSFSITIFNASSGLYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEH
LKIMTVAAAVFVPIILVYQLWVYRIFRHKIPAARTGEDLYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDYQLIWFVLWGLLWAAYFATGGFDLGAGMLLPGLGKTEHEKEALLESFGPLWNGNEVWL
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEE
VTAGGATFAAFPTAYAVLFSSFYIPLLLILFALIVRGVALEFREKLASQSWRKACDTAIV
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGSVVPAFLFGVFFGNVFQGLPLDDRGYSGTFLQLLNPYTLLAGILFCVLFLSHGALWIA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHCCCEEEE
YRTEGDLSMRAATFARNYWPAVALAVILFFISSIFKTQLFANYLQNALLFLFPVLSLLSL
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALRFYLKKSEFLSAFLFSGLNIILVMATALAGLYPNLLPSLSNPSFSITIFNASSGLYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEH
LKIMTVAAAVFVPIILVYQLWVYRIFRHKIPAARTGEDLYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]