| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is ispH [H]
Identifier: 85859633
GI number: 85859633
Start: 1862575
End: 1864308
Strand: Direct
Name: ispH [H]
Synonym: SYN_02454
Alternate gene names: 85859633
Gene position: 1862575-1864308 (Clockwise)
Preceding gene: 85859632
Following gene: 85859634
Centisome position: 58.58
GC content: 52.6
Gene sequence:
>1734_bases ATGAGTGTCTTTCTCGCAAAGACGGCAGGGTTCTGCATGGGCGTCAAACGTGCCGTGGATACGGTTCTGGATATCGCCCG CCACAAGGGATCGGAAAAAATCTATACCTACGGTCCTCTGATTCACAATCCTCAAACTGTCGAATTCCTGAGGGAAAGAG GAATTATTCCCATTAAGGATATCGAGGCCCTTTCTGCATCGGATCAAAATGCGGCCATCGTCATCCGAGCTCATGGCATC TCGCCGAGCGAACGAAAGAAGATCCGGAATAAAGGGCTGCGGATCATCGACGCAACCTGTCCGAAAGTCACCCATGTCCA GGCGATTATCCGGCAGCATGCCGCAAAAGATTACAACATCCTGATCATCGGTGACGGCGACCACCCTGAAGTCAACGGCC TTCTCGGACATGCCGGCGGTCATGGCCGGGTCATCGGCAGCCTCCAGAACGTTGAAGAACTTCCGATTATGGAAAAGGTC TGCGTCGTTGCCCAGACCACTCAAAACGTTGAAGAATATGCTGCAATCGTCCGCCGGATCCGCGATCGATTTCCGGAAAC CGTCGTGTTTAATACCATCTGTGATTCCACGGAACAGCGGCAGGCTGAAGTTCGCGAACTTGCCGCCAGAATGGAGGCCA TGGTGATCGTGGGCGGCAGGAACAGCGCCAATACACGGCGTCTGGCCGCCCTGTCCTCTCAGCAGGGCACTCCGACCTTT CATATCGAGACAGCCGATGAACTTAACGACGCGAAACTGGCTCCCTATGACCGGATCGGACTTTCTGCCGGAGCCTCCAC GCCCAACTGGATCATTGACCGGGTTGTCGACCGCATTGCGGAACAGCAGAGGAAAAAGAAAAATAAGGGGAAGGGACTGC TGAAGCTCTGGACCCTTTCAGTGAGGACCGATCTCTATTCCGCCCTTGGGGCGGCTTGTCTGTCCCTGACCGCCATGCTT CTGGAACGGGTCCCGGTGAATATCCTTTTCCTTCTGATCACCGCCCTATATGTCCATGCGATGCATACCTTCAACAGGTT TTCGAACCGAAAGACGTGCAGCATCGGTTCCTTCCGCGAAGAATCCTACCTGAAGCACGAGAATTTTTATCTTTCCGGAG CGCTTGCCTCCATGCTGCTCTGTCTTGGTCTTGCCCTGAGTCATGGGATGCGGACCTTTCTTCTGCTTTTTTTCATATCG GGGTTGGGCATTCTCTACAATCTGCCCATCTTTCCCGCAAAATGGAGATATCGCAGCTTAAAGGATCTGCCCGGATCAAA AAACATCTCCATGGCCATGGCGTGGGCCACTGTTGTTGCCATCCTGCCCGGCATGGAGCGGGGGTTGTTTGTTTCGCCGG GAATTGCCATCGCCTTTCTTTTCACCATGGGCATCGTGTTTATCCGTTCCTCTCTTTCGGATATTCTGGATATTCAGCGC GACAGGCTGATTGGCAAGGAAACGATTCCCGTGCTCATCGGCAGAGAACCAACACAGGTTCTCCTGACAATACTGTCCAT TTTTATTTTTTTTCTACTGATAGCGGGTGCGTCCGCGAAATGGACTCCATCGCTTTCACTGGTCCTTCCGGCCAACTTAT TTTATGTATGGATTTGTTTTAAACTTTGTGATAGAAGGGCGTCGTTTTCCGGGGTTGTTCTGGAGGGTCTTCTGGAAACC AGCTATATTATCGCCGGGTTGAGTTCACTGCTGTGGTGCGCCCTATCCCGTTAA
Upstream 100 bases:
>100_bases CTGCCCGGCTGCCGGAAGAAAAACTTTCATTTCCCGGTCGGCTGGAGTCTTCTCCTGCAAGTCAGGAAACCGCTCAGGAC AAGGAGCTGTTGTCAAAACA
Downstream 100 bases:
>100_bases ACAAAAGAAGTGAGCGACCCTTGTGTTTGCAGGAGTGTCCCGTGAAGAGAAGATACTGGAACGCTTTCATTGCCCTTTTC CTGATTCTGATGATTTCCGC
Product: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 577; Mature: 576
Protein sequence:
>577_residues MSVFLAKTAGFCMGVKRAVDTVLDIARHKGSEKIYTYGPLIHNPQTVEFLRERGIIPIKDIEALSASDQNAAIVIRAHGI SPSERKKIRNKGLRIIDATCPKVTHVQAIIRQHAAKDYNILIIGDGDHPEVNGLLGHAGGHGRVIGSLQNVEELPIMEKV CVVAQTTQNVEEYAAIVRRIRDRFPETVVFNTICDSTEQRQAEVRELAARMEAMVIVGGRNSANTRRLAALSSQQGTPTF HIETADELNDAKLAPYDRIGLSAGASTPNWIIDRVVDRIAEQQRKKKNKGKGLLKLWTLSVRTDLYSALGAACLSLTAML LERVPVNILFLLITALYVHAMHTFNRFSNRKTCSIGSFREESYLKHENFYLSGALASMLLCLGLALSHGMRTFLLLFFIS GLGILYNLPIFPAKWRYRSLKDLPGSKNISMAMAWATVVAILPGMERGLFVSPGIAIAFLFTMGIVFIRSSLSDILDIQR DRLIGKETIPVLIGREPTQVLLTILSIFIFFLLIAGASAKWTPSLSLVLPANLFYVWICFKLCDRRASFSGVVLEGLLET SYIIAGLSSLLWCALSR
Sequences:
>Translated_577_residues MSVFLAKTAGFCMGVKRAVDTVLDIARHKGSEKIYTYGPLIHNPQTVEFLRERGIIPIKDIEALSASDQNAAIVIRAHGI SPSERKKIRNKGLRIIDATCPKVTHVQAIIRQHAAKDYNILIIGDGDHPEVNGLLGHAGGHGRVIGSLQNVEELPIMEKV CVVAQTTQNVEEYAAIVRRIRDRFPETVVFNTICDSTEQRQAEVRELAARMEAMVIVGGRNSANTRRLAALSSQQGTPTF HIETADELNDAKLAPYDRIGLSAGASTPNWIIDRVVDRIAEQQRKKKNKGKGLLKLWTLSVRTDLYSALGAACLSLTAML LERVPVNILFLLITALYVHAMHTFNRFSNRKTCSIGSFREESYLKHENFYLSGALASMLLCLGLALSHGMRTFLLLFFIS GLGILYNLPIFPAKWRYRSLKDLPGSKNISMAMAWATVVAILPGMERGLFVSPGIAIAFLFTMGIVFIRSSLSDILDIQR DRLIGKETIPVLIGREPTQVLLTILSIFIFFLLIAGASAKWTPSLSLVLPANLFYVWICFKLCDRRASFSGVVLEGLLET SYIIAGLSSLLWCALSR >Mature_576_residues SVFLAKTAGFCMGVKRAVDTVLDIARHKGSEKIYTYGPLIHNPQTVEFLRERGIIPIKDIEALSASDQNAAIVIRAHGIS PSERKKIRNKGLRIIDATCPKVTHVQAIIRQHAAKDYNILIIGDGDHPEVNGLLGHAGGHGRVIGSLQNVEELPIMEKVC VVAQTTQNVEEYAAIVRRIRDRFPETVVFNTICDSTEQRQAEVRELAARMEAMVIVGGRNSANTRRLAALSSQQGTPTFH IETADELNDAKLAPYDRIGLSAGASTPNWIIDRVVDRIAEQQRKKKNKGKGLLKLWTLSVRTDLYSALGAACLSLTAMLL ERVPVNILFLLITALYVHAMHTFNRFSNRKTCSIGSFREESYLKHENFYLSGALASMLLCLGLALSHGMRTFLLLFFISG LGILYNLPIFPAKWRYRSLKDLPGSKNISMAMAWATVVAILPGMERGLFVSPGIAIAFLFTMGIVFIRSSLSDILDIQRD RLIGKETIPVLIGREPTQVLLTILSIFIFFLLIAGASAKWTPSLSLVLPANLFYVWICFKLCDRRASFSGVVLEGLLETS YIIAGLSSLLWCALSR
Specific function: Converts 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) [H]
COG id: COG0761
COG function: function code IM; Penicillin tolerance protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispH family [H]
Homologues:
Organism=Escherichia coli, GI1786212, Length=288, Percent_Identity=33.3333333333333, Blast_Score=151, Evalue=9e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003451 [H]
Pfam domain/function: PF02401 LYTB [H]
EC number: =1.17.1.2 [H]
Molecular weight: Translated: 63851; Mature: 63720
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVFLAKTAGFCMGVKRAVDTVLDIARHKGSEKIYTYGPLIHNPQTVEFLRERGIIPIKD CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHH IEALSASDQNAAIVIRAHGISPSERKKIRNKGLRIIDATCPKVTHVQAIIRQHAAKDYNI HHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCEE LIIGDGDHPEVNGLLGHAGGHGRVIGSLQNVEELPIMEKVCVVAQTTQNVEEYAAIVRRI EEEECCCCCCCCCEEECCCCCCCEECCHHCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHH RDRFPETVVFNTICDSTEQRQAEVRELAARMEAMVIVGGRNSANTRRLAALSSQQGTPTF HHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHCCCCCCCEE HIETADELNDAKLAPYDRIGLSAGASTPNWIIDRVVDRIAEQQRKKKNKGKGLLKLWTLS EEECCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH VRTDLYSALGAACLSLTAMLLERVPVNILFLLITALYVHAMHTFNRFSNRKTCSIGSFRE HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH ESYLKHENFYLSGALASMLLCLGLALSHGMRTFLLLFFISGLGILYNLPIFPAKWRYRSL HHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH KDLPGSKNISMAMAWATVVAILPGMERGLFVSPGIAIAFLFTMGIVFIRSSLSDILDIQR HCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH DRLIGKETIPVLIGREPTQVLLTILSIFIFFLLIAGASAKWTPSLSLVLPANLFYVWICF HHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHH KLCDRRASFSGVVLEGLLETSYIIAGLSSLLWCALSR HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SVFLAKTAGFCMGVKRAVDTVLDIARHKGSEKIYTYGPLIHNPQTVEFLRERGIIPIKD CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHCCCCCCHH IEALSASDQNAAIVIRAHGISPSERKKIRNKGLRIIDATCPKVTHVQAIIRQHAAKDYNI HHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCCCEE LIIGDGDHPEVNGLLGHAGGHGRVIGSLQNVEELPIMEKVCVVAQTTQNVEEYAAIVRRI EEEECCCCCCCCCEEECCCCCCCEECCHHCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHH RDRFPETVVFNTICDSTEQRQAEVRELAARMEAMVIVGGRNSANTRRLAALSSQQGTPTF HHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHCCCCCCCEE HIETADELNDAKLAPYDRIGLSAGASTPNWIIDRVVDRIAEQQRKKKNKGKGLLKLWTLS EEECCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHH VRTDLYSALGAACLSLTAMLLERVPVNILFLLITALYVHAMHTFNRFSNRKTCSIGSFRE HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH ESYLKHENFYLSGALASMLLCLGLALSHGMRTFLLLFFISGLGILYNLPIFPAKWRYRSL HHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH KDLPGSKNISMAMAWATVVAILPGMERGLFVSPGIAIAFLFTMGIVFIRSSLSDILDIQR HCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH DRLIGKETIPVLIGREPTQVLLTILSIFIFFLLIAGASAKWTPSLSLVLPANLFYVWICF HHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHH KLCDRRASFSGVVLEGLLETSYIIAGLSSLLWCALSR HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA