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The map label for this gene is yqxC [H]

Identifier: 85859632

GI number: 85859632

Start: 1861745

End: 1862578

Strand: Direct

Name: yqxC [H]

Synonym: SYN_02455

Alternate gene names: 85859632

Gene position: 1861745-1862578 (Clockwise)

Preceding gene: 85859631

Following gene: 85859633

Centisome position: 58.56

GC content: 57.79

Gene sequence:

>834_bases
ATGGGAAGTAGAGAAGAAAAAATCCGTCTGGACCTGCTCCTGGTGAACCGGGGTCTGTCGGCAAGCCGGGAACGGGCCAG
GGCCCTCATTCTATCCGGCGCCGTCCTGGTGGACGAAAAACCCGCGGACAAGGCGGGGGCGCTCGTATCCTGCGCGGCGT
CTGTAAGGATCAAGGGAAAGGATCACCCCTACGTAAGCCGCGGCGGACTGAAGCTCAAAGGCGCTCTCGATGCCTTTCAA
ATCGATGTCCGGGATCTCGTCGCTCTTGACGTCGGGGCTTCCACCGGCGGCTTCACCGATTGTCTCCTTCAGGAAGGCGC
ACGCCGGGTCTATGCCCTGGACGTGGGGTACGGCCAGCTGGCATGGAAACTTCGCACCGATCCCCGGGTCATCTGCATCG
AAAGGACGAATATCCGTTATTTTGACGGCACAGGTATGGACGTTCCGGTGGACCTGGTAACCATCGACGCCTCGTTCATC
TCTCTGAAGCTGGTTATCCCTGCCGCGTTGAAATTTCTTGGGGAGGGAGGTCTCCTTCTCGCCCTGATCAAGCCTCAATT
TGAAGTGGGAAAAGGCCAGGTGGGGAAAGGCGGCGTGGTCCGTGAACCCGCACTCAGGCAGAACGTTCTGAACGACCTGA
CGGCCTTTCTCCGGGACATGGGTCTGGAAGTGTTGGGATCGATCGTATCCCCTCTTCCTGGTCCCAAGGGAAACAGGGAA
TTTTTTGTCTCTGCCCGGCTGCCGGAAGAAAAACTTTCATTTCCCGGTCGGCTGGAGTCTTCTCCTGCAAGTCAGGAAAC
CGCTCAGGACAAGGAGCTGTTGTCAAAACAATGA

Upstream 100 bases:

>100_bases
TTGCTGCCGCTGTCCGGTCGATGATGAACATGGGCAGATCGTCCCAGATGGAGGCCTGCCTTTGATATGTCTTCCGATTC
GGATTTTCTGACCATTTACC

Downstream 100 bases:

>100_bases
GTGTCTTTCTCGCAAAGACGGCAGGGTTCTGCATGGGCGTCAAACGTGCCGTGGATACGGTTCTGGATATCGCCCGCCAC
AAGGGATCGGAAAAAATCTA

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MGSREEKIRLDLLLVNRGLSASRERARALILSGAVLVDEKPADKAGALVSCAASVRIKGKDHPYVSRGGLKLKGALDAFQ
IDVRDLVALDVGASTGGFTDCLLQEGARRVYALDVGYGQLAWKLRTDPRVICIERTNIRYFDGTGMDVPVDLVTIDASFI
SLKLVIPAALKFLGEGGLLLALIKPQFEVGKGQVGKGGVVREPALRQNVLNDLTAFLRDMGLEVLGSIVSPLPGPKGNRE
FFVSARLPEEKLSFPGRLESSPASQETAQDKELLSKQ

Sequences:

>Translated_277_residues
MGSREEKIRLDLLLVNRGLSASRERARALILSGAVLVDEKPADKAGALVSCAASVRIKGKDHPYVSRGGLKLKGALDAFQ
IDVRDLVALDVGASTGGFTDCLLQEGARRVYALDVGYGQLAWKLRTDPRVICIERTNIRYFDGTGMDVPVDLVTIDASFI
SLKLVIPAALKFLGEGGLLLALIKPQFEVGKGQVGKGGVVREPALRQNVLNDLTAFLRDMGLEVLGSIVSPLPGPKGNRE
FFVSARLPEEKLSFPGRLESSPASQETAQDKELLSKQ
>Mature_276_residues
GSREEKIRLDLLLVNRGLSASRERARALILSGAVLVDEKPADKAGALVSCAASVRIKGKDHPYVSRGGLKLKGALDAFQI
DVRDLVALDVGASTGGFTDCLLQEGARRVYALDVGYGQLAWKLRTDPRVICIERTNIRYFDGTGMDVPVDLVTIDASFIS
LKLVIPAALKFLGEGGLLLALIKPQFEVGKGQVGKGGVVREPALRQNVLNDLTAFLRDMGLEVLGSIVSPLPGPKGNREF
FVSARLPEEKLSFPGRLESSPASQETAQDKELLSKQ

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29823; Mature: 29692

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSREEKIRLDLLLVNRGLSASRERARALILSGAVLVDEKPADKAGALVSCAASVRIKGK
CCCCCCEEEEEEEEEECCCCCHHHHHHEEEEECEEEEECCCCCHHCCEEEEEEEEEECCC
DHPYVSRGGLKLKGALDAFQIDVRDLVALDVGASTGGFTDCLLQEGARRVYALDVGYGQL
CCCEEECCCEEEECCCCCEEECHHHEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCEE
AWKLRTDPRVICIERTNIRYFDGTGMDVPVDLVTIDASFISLKLVIPAALKFLGEGGLLL
EEEECCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHCCCCEEE
ALIKPQFEVGKGQVGKGGVVREPALRQNVLNDLTAFLRDMGLEVLGSIVSPLPGPKGNRE
EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCE
FFVSARLPEEKLSFPGRLESSPASQETAQDKELLSKQ
EEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
GSREEKIRLDLLLVNRGLSASRERARALILSGAVLVDEKPADKAGALVSCAASVRIKGK
CCCCCEEEEEEEEEECCCCCHHHHHHEEEEECEEEEECCCCCHHCCEEEEEEEEEECCC
DHPYVSRGGLKLKGALDAFQIDVRDLVALDVGASTGGFTDCLLQEGARRVYALDVGYGQL
CCCEEECCCEEEECCCCCEEECHHHEEEEECCCCCCCHHHHHHHHCCCEEEEEECCCCEE
AWKLRTDPRVICIERTNIRYFDGTGMDVPVDLVTIDASFISLKLVIPAALKFLGEGGLLL
EEEECCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHCCCCEEE
ALIKPQFEVGKGQVGKGGVVREPALRQNVLNDLTAFLRDMGLEVLGSIVSPLPGPKGNRE
EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCE
FFVSARLPEEKLSFPGRLESSPASQETAQDKELLSKQ
EEEEECCCHHHCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]