| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is 85859603
Identifier: 85859603
GI number: 85859603
Start: 1832659
End: 1835139
Strand: Direct
Name: 85859603
Synonym: SYN_02014
Alternate gene names: NA
Gene position: 1832659-1835139 (Clockwise)
Preceding gene: 85859601
Following gene: 85859605
Centisome position: 57.64
GC content: 45.71
Gene sequence:
>2481_bases ATGAGCAAACGAATTCTTTCTTCAGGTCAAAAAAACACCACACATATGAAATCCCACAGGCTGATTACTTACCCTGCCAT TGCTGACAGCGTTGACCTGCCTGATTTCATCTTTCACAAAAGCAGTGACAGGGATGCGTTTATCCTGTTGACCGGGGCTG AGCAGAAACTCCTCTTTGAACAGAAGAAAGCCACGAACAGAGCAATGGAGCTTGATAATCGCAGGCTGATGACGCTGCTT TCCCCCATATGGGCAAAGTTCACGAATTCGGATGTCACACTTCATATCATTTCTGAGCGTGGAGCTGTTTTAAAAATCAA ACAGTTCAGGACTGGAATTGTAATTCAGGCACATTGGAATTTGTTTCAACCCTATTTTTATCAGATCAAGAATCTTCCTA TCGCCCATTCCGAGATCCTGGATGTTTTTGCACGCGCCGTCTTTAATTACGCGGCTCTGGCCATGAAACATGACGGGATG GAAAAGAGCGAATTCAGGAATGTCGTGATTGACGCATATATTTTGCAGCCGGAACTTTTGCTTGCTTCGCTGGATATCCT TAACAAACCCAATATCTACCACATTCACTCGACAAGAATCTGGCTGACCAAGATATCCGAAGCCAATGACAAACATCGTC TGCAGATTGACGTTTCCGCCGCGGCAGCCAATCCTCTTGTCAGCCTTGGATTCTTAAAAGAAGTGGCCGTTTTCATTCAC AAGGTTGCGAAAAACTATGCGTTCCGCTACGTGGATTATTTATGGACCCAGCAGTACAGTATTACATGTGATACCCGGCC GGAACTGAACATGGTGACCCGGGAAGGAAATGTCATTTCGATCAACATTTACCCTCTTCTCAATAAGACCAACTGGAAAC CGATGCTTTACCTGAGTCTTGGATATGCGATCATGCTCGCTCTACTCGAAGCGTCGGGAGGAGAGGATGAAAAAATAAAC GTTTATTTATCCATGATGAAGACCTGGAATCGTTATTTGAGTTTTGACGAATCCATGGAGCAGCAATGTGTGCGGGAAAT CTGCCGGCTGCCTTCGTCCTCCGAAGTAGAAAGCCGCGTTCTGCTGAAATGCATGACGTGCGGGGAAAACATGGAACTGA TTGATGAATTTATCAGATTGATTGACTATTCCGCACAGGAGACCATTGAGGATAAGTTGAAATTATTGAAGGAAGCCCGT TCCGGAAACGAAACAGGCGCTCAATATGAGCAGTTATGGGATCGAGTACGCAATCTGAATGCCGGTCTGGTGAAGAATAA CATCAATTACAGCAAATTTATTGAGGTGCTGCGTAATGACAATATCGATTATATTCAGCTTGCGGATTTATTGCGCACAG GCCGCCTGGAAAACCGCTGTGTTGTCGATGTGAGCGAATGGCTTTTGTTAAGAACGCTTTTATATGATCTGATCAGTTCG ACAAAGGTCTTCAGCAACGATTACAAAATGCTTTTGAAGGTTCTGACAAAAGTAAACAAAAGCCTGATTGTATATGTCTG GACATTGGTTTTTGACAACGATATGCGTCACGAACGGGTCAACACGTATATAGCAAGATTGCTTAATGATATCTTTGTGT TTAATCGTGTGAAGATCTACGAAATCGTCTCAGATCCAGCAGAATGCCTGGAAACTGAGGCTGTGACCGGGTATCTTCTG AATTGGGCCGGTCTTTCGCAGGATGAACTGCGTTCGATCAGAAACAAGGTGCCGTTTAACTTGCCGCGCAACATAGTCCC CTGCTTGAATATCCGGACTGCAGGAGATGTGGATCATCTGGTTCGCGTAATGACGATCCGCTCCAGTGGAATCATTGGCT TCTGTCTGCACAAGGTTTATCAATGGGGAAGCATGCAGGATGAACTCACAGGAAAAATCCGTTCCCATTTTCCCGAACTT CTTCAAAAGGCCCAGGATGCCATGCATCCTCGAAAGATCATCATGGGGGGAGCCATGCTTCTTCTGGTTTTGGCTCAGAC CATTTCCGACCAGCGTGACGGGTTTGCGCAAAATGTTGCCATTAAAGAAGAAGACAGGCAGATCGTTCTCAATCTGATCA AGCAGTGCATCGATTGGGACCAGCGGCATTACATCATGATGGTCGGGGGGATTGCGGCTGGTTATCTGGGAATCATCGAT GGATGGATACTGCGCCAGTTCGACATCCTGCTGGGTCGTTATGGTGGCGGAGATCGTGTGGTATTGCGCAGTGTTGTGCA GTTTGATGTCGAAAATCTGATTCAAAGGACTCTAATTACAGCTAAGGAGGGAAAAGAAAGCGAGCTGCTGAAAAAGATTC AGCTGCTTCGTCTTGGGGTTGATCCCGTCATAAGCGATCAAGTCAATAAATTTTTCGGAACGTTGGCTTGCCGCTACGGA ATTTCCGCGGCGGAAGTTGCTTTGAAGAAAAAAGATATCGGTGAACTGATTCTGGAATTATCCCGTCGAATGAAAGCCTG A
Upstream 100 bases:
>100_bases TGTGTATAGTGCGGTATTAAAACAGCATTGAAGAAATTATACACCGGCCGGGTTCCACGTAATTTTCCGGTTTTTTAATT CGAGATCAGGAGACCCACCA
Downstream 100 bases:
>100_bases ATATGGGGCGTCAGCTGAAAACAGGAAATCAAATTCCACCTGCAAACAAGCGTGATATAACGATCTTCAGCCTTTCAATA CGCGAGTCGGCATCGCCTCC
Product: cytoplasmic protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 826; Mature: 825
Protein sequence:
>826_residues MSKRILSSGQKNTTHMKSHRLITYPAIADSVDLPDFIFHKSSDRDAFILLTGAEQKLLFEQKKATNRAMELDNRRLMTLL SPIWAKFTNSDVTLHIISERGAVLKIKQFRTGIVIQAHWNLFQPYFYQIKNLPIAHSEILDVFARAVFNYAALAMKHDGM EKSEFRNVVIDAYILQPELLLASLDILNKPNIYHIHSTRIWLTKISEANDKHRLQIDVSAAAANPLVSLGFLKEVAVFIH KVAKNYAFRYVDYLWTQQYSITCDTRPELNMVTREGNVISINIYPLLNKTNWKPMLYLSLGYAIMLALLEASGGEDEKIN VYLSMMKTWNRYLSFDESMEQQCVREICRLPSSSEVESRVLLKCMTCGENMELIDEFIRLIDYSAQETIEDKLKLLKEAR SGNETGAQYEQLWDRVRNLNAGLVKNNINYSKFIEVLRNDNIDYIQLADLLRTGRLENRCVVDVSEWLLLRTLLYDLISS TKVFSNDYKMLLKVLTKVNKSLIVYVWTLVFDNDMRHERVNTYIARLLNDIFVFNRVKIYEIVSDPAECLETEAVTGYLL NWAGLSQDELRSIRNKVPFNLPRNIVPCLNIRTAGDVDHLVRVMTIRSSGIIGFCLHKVYQWGSMQDELTGKIRSHFPEL LQKAQDAMHPRKIIMGGAMLLLVLAQTISDQRDGFAQNVAIKEEDRQIVLNLIKQCIDWDQRHYIMMVGGIAAGYLGIID GWILRQFDILLGRYGGGDRVVLRSVVQFDVENLIQRTLITAKEGKESELLKKIQLLRLGVDPVISDQVNKFFGTLACRYG ISAAEVALKKKDIGELILELSRRMKA
Sequences:
>Translated_826_residues MSKRILSSGQKNTTHMKSHRLITYPAIADSVDLPDFIFHKSSDRDAFILLTGAEQKLLFEQKKATNRAMELDNRRLMTLL SPIWAKFTNSDVTLHIISERGAVLKIKQFRTGIVIQAHWNLFQPYFYQIKNLPIAHSEILDVFARAVFNYAALAMKHDGM EKSEFRNVVIDAYILQPELLLASLDILNKPNIYHIHSTRIWLTKISEANDKHRLQIDVSAAAANPLVSLGFLKEVAVFIH KVAKNYAFRYVDYLWTQQYSITCDTRPELNMVTREGNVISINIYPLLNKTNWKPMLYLSLGYAIMLALLEASGGEDEKIN VYLSMMKTWNRYLSFDESMEQQCVREICRLPSSSEVESRVLLKCMTCGENMELIDEFIRLIDYSAQETIEDKLKLLKEAR SGNETGAQYEQLWDRVRNLNAGLVKNNINYSKFIEVLRNDNIDYIQLADLLRTGRLENRCVVDVSEWLLLRTLLYDLISS TKVFSNDYKMLLKVLTKVNKSLIVYVWTLVFDNDMRHERVNTYIARLLNDIFVFNRVKIYEIVSDPAECLETEAVTGYLL NWAGLSQDELRSIRNKVPFNLPRNIVPCLNIRTAGDVDHLVRVMTIRSSGIIGFCLHKVYQWGSMQDELTGKIRSHFPEL LQKAQDAMHPRKIIMGGAMLLLVLAQTISDQRDGFAQNVAIKEEDRQIVLNLIKQCIDWDQRHYIMMVGGIAAGYLGIID GWILRQFDILLGRYGGGDRVVLRSVVQFDVENLIQRTLITAKEGKESELLKKIQLLRLGVDPVISDQVNKFFGTLACRYG ISAAEVALKKKDIGELILELSRRMKA >Mature_825_residues SKRILSSGQKNTTHMKSHRLITYPAIADSVDLPDFIFHKSSDRDAFILLTGAEQKLLFEQKKATNRAMELDNRRLMTLLS PIWAKFTNSDVTLHIISERGAVLKIKQFRTGIVIQAHWNLFQPYFYQIKNLPIAHSEILDVFARAVFNYAALAMKHDGME KSEFRNVVIDAYILQPELLLASLDILNKPNIYHIHSTRIWLTKISEANDKHRLQIDVSAAAANPLVSLGFLKEVAVFIHK VAKNYAFRYVDYLWTQQYSITCDTRPELNMVTREGNVISINIYPLLNKTNWKPMLYLSLGYAIMLALLEASGGEDEKINV YLSMMKTWNRYLSFDESMEQQCVREICRLPSSSEVESRVLLKCMTCGENMELIDEFIRLIDYSAQETIEDKLKLLKEARS GNETGAQYEQLWDRVRNLNAGLVKNNINYSKFIEVLRNDNIDYIQLADLLRTGRLENRCVVDVSEWLLLRTLLYDLISST KVFSNDYKMLLKVLTKVNKSLIVYVWTLVFDNDMRHERVNTYIARLLNDIFVFNRVKIYEIVSDPAECLETEAVTGYLLN WAGLSQDELRSIRNKVPFNLPRNIVPCLNIRTAGDVDHLVRVMTIRSSGIIGFCLHKVYQWGSMQDELTGKIRSHFPELL QKAQDAMHPRKIIMGGAMLLLVLAQTISDQRDGFAQNVAIKEEDRQIVLNLIKQCIDWDQRHYIMMVGGIAAGYLGIIDG WILRQFDILLGRYGGGDRVVLRSVVQFDVENLIQRTLITAKEGKESELLKKIQLLRLGVDPVISDQVNKFFGTLACRYGI SAAEVALKKKDIGELILELSRRMKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94888; Mature: 94757
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRILSSGQKNTTHMKSHRLITYPAIADSVDLPDFIFHKSSDRDAFILLTGAEQKLLFE CCCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCCHHHHHH QKKATNRAMELDNRRLMTLLSPIWAKFTNSDVTLHIISERGAVLKIKQFRTGIVIQAHWN HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC LFQPYFYQIKNLPIAHSEILDVFARAVFNYAALAMKHDGMEKSEFRNVVIDAYILQPELL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEHEECHHHH LASLDILNKPNIYHIHSTRIWLTKISEANDKHRLQIDVSAAAANPLVSLGFLKEVAVFIH HHHHHHCCCCCEEEEECCEEEEEEECCCCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHH KVAKNYAFRYVDYLWTQQYSITCDTRPELNMVTREGNVISINIYPLLNKTNWKPMLYLSL HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCEEEEEEEEEECCCCCCEEEEHHH GYAIMLALLEASGGEDEKINVYLSMMKTWNRYLSFDESMEQQCVREICRLPSSSEVESRV HHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH LLKCMTCGENMELIDEFIRLIDYSAQETIEDKLKLLKEARSGNETGAQYEQLWDRVRNLN HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC AGLVKNNINYSKFIEVLRNDNIDYIQLADLLRTGRLENRCVVDVSEWLLLRTLLYDLISS CCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHC TKVFSNDYKMLLKVLTKVNKSLIVYVWTLVFDNDMRHERVNTYIARLLNDIFVFNRVKIY CHHHHHHHHHHHHHHHHHCCHHEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEE EIVSDPAECLETEAVTGYLLNWAGLSQDELRSIRNKVPFNLPRNIVPCLNIRTAGDVDHL HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH VRVMTIRSSGIIGFCLHKVYQWGSMQDELTGKIRSHFPELLQKAQDAMHPRKIIMGGAML HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LLVLAQTISDQRDGFAQNVAIKEEDRQIVLNLIKQCIDWDQRHYIMMVGGIAAGYLGIID HHHHHHHHHHHHCCHHHCCEECHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH GWILRQFDILLGRYGGGDRVVLRSVVQFDVENLIQRTLITAKEGKESELLKKIQLLRLGV HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC DPVISDQVNKFFGTLACRYGISAAEVALKKKDIGELILELSRRMKA CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKRILSSGQKNTTHMKSHRLITYPAIADSVDLPDFIFHKSSDRDAFILLTGAEQKLLFE CCCCCCCCCCCCHHHHCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEEEECCCHHHHHH QKKATNRAMELDNRRLMTLLSPIWAKFTNSDVTLHIISERGAVLKIKQFRTGIVIQAHWN HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC LFQPYFYQIKNLPIAHSEILDVFARAVFNYAALAMKHDGMEKSEFRNVVIDAYILQPELL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHEEHEECHHHH LASLDILNKPNIYHIHSTRIWLTKISEANDKHRLQIDVSAAAANPLVSLGFLKEVAVFIH HHHHHHCCCCCEEEEECCEEEEEEECCCCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHH KVAKNYAFRYVDYLWTQQYSITCDTRPELNMVTREGNVISINIYPLLNKTNWKPMLYLSL HHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEECCCEEEEEEEEEECCCCCCEEEEHHH GYAIMLALLEASGGEDEKINVYLSMMKTWNRYLSFDESMEQQCVREICRLPSSSEVESRV HHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHH LLKCMTCGENMELIDEFIRLIDYSAQETIEDKLKLLKEARSGNETGAQYEQLWDRVRNLN HHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC AGLVKNNINYSKFIEVLRNDNIDYIQLADLLRTGRLENRCVVDVSEWLLLRTLLYDLISS CCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHC TKVFSNDYKMLLKVLTKVNKSLIVYVWTLVFDNDMRHERVNTYIARLLNDIFVFNRVKIY CHHHHHHHHHHHHHHHHHCCHHEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEE EIVSDPAECLETEAVTGYLLNWAGLSQDELRSIRNKVPFNLPRNIVPCLNIRTAGDVDHL HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH VRVMTIRSSGIIGFCLHKVYQWGSMQDELTGKIRSHFPELLQKAQDAMHPRKIIMGGAML HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH LLVLAQTISDQRDGFAQNVAIKEEDRQIVLNLIKQCIDWDQRHYIMMVGGIAAGYLGIID HHHHHHHHHHHHCCHHHCCEECHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH GWILRQFDILLGRYGGGDRVVLRSVVQFDVENLIQRTLITAKEGKESELLKKIQLLRLGV HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC DPVISDQVNKFFGTLACRYGISAAEVALKKKDIGELILELSRRMKA CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA