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The map label for this gene is traU [H]

Identifier: 85859527

GI number: 85859527

Start: 1753532

End: 1754551

Strand: Direct

Name: traU [H]

Synonym: SYN_01869

Alternate gene names: 85859527

Gene position: 1753532-1754551 (Clockwise)

Preceding gene: 85859526

Following gene: 85859528

Centisome position: 55.15

GC content: 61.76

Gene sequence:

>1020_bases
ATGCCCTCGACGACAAGGGGCAAAAGAAGCGGAAGTAGGGACGTCGTGAAGGGGTTTTTCGTTCTCCTCATTCTCTTTCA
CGCCGTTGGAGCACAGGCTGTATGCAGGTCCGGGATTCCGTTGAACCCGGTGACCGACCTCTGCTGGCAGTGCATATTCC
CGGTGAGCATCGCCGGGATCGAGATCATTCCCGGCCCGGTGGAAAACAACGTTCCGGACCTTTCGGGCATGCCCGTCTGC
GCGTGTCCGGCGCCGCCCCCGCTCTTCATCAGGATCGGCATCCCCGTCAGCTTCTGGGAACCGGCCAGGTACGTGGAAAC
AGTCAAGGATCCTTACTGCTTCCCGAGCCTGGGCTTCGGCCTCACCGCGGCGGGCGGCTTTCTCGGCGGGGGCTCGCAGG
AGCAGGGGAACGCGAGTGTGGATACCTCCACCTTTGCCCAGGCGCATTACTTTATTTATCCCGTTTGGTCCATTATGGAG
CTCCTTACCGATTTTGCCTGCATCGAGCACAGCGGTTTCGACGTTGCGTACCTCACGGAGGTGGACCCTCTCTGGCAGAA
TGACATCCTTGCCTTCATTCTGGAGCCGGAGTCGATCCTCTTCGGGAATCCCATCGCCCAGACGGCCTGCATCGCCGACA
GCGTCTCGACCAACGCGGGTTTCTCCATGAGCCCCCTTTTCTGGTGCATCGGCTCGGGCGGGAGCGCCTACCCGCTCACG
GGGCACGTGAACGACGACAACGAGCTCATGGCCAATTCCACGATCGCCGCCCGGATGGTTTACAAGTTGGCCAGGGAGGG
GCTCGTCTGCGACACGGCCCTCAACCTGTGCGCCTGCGTCCCCACGCCCATCTGGGTGAAGCACAACTGGCGCATGCACG
TCGCCAAGCCGGTGCGCGACTTCATGTGCCATCCCTTCGGGAGGACGGGGCTCATCTGGGGAGCGCTCAAGAACCCGCCG
CTCGTAGGGGACAACTTCGTCTGGCAGCTCTTCAGGAGAAGGTCATGCTGCGCTTTCTGA

Upstream 100 bases:

>100_bases
CCGGCGTTCTACGCGGACGCCAGAATCGTGAAAAGGTTTCAACTGAAGGCGGTCCCCGCCGTGATCGTTCAAAAGGGTAC
CGTCATGGAGGTGAGAGAAT

Downstream 100 bases:

>100_bases
TCAAGAAAGGAACCCGGATGGGACTACTGATCCTTTTCGCGTTTATGGGTTTCTTACATGCGTCCATTCCCGACTCTGGA
GCGGATGACATGGAGGACAT

Product: conjugal DNA transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MPSTTRGKRSGSRDVVKGFFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGIEIIPGPVENNVPDLSGMPVC
ACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFGLTAAGGFLGGGSQEQGNASVDTSTFAQAHYFIYPVWSIME
LLTDFACIEHSGFDVAYLTEVDPLWQNDILAFILEPESILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLT
GHVNDDNELMANSTIAARMVYKLAREGLVCDTALNLCACVPTPIWVKHNWRMHVAKPVRDFMCHPFGRTGLIWGALKNPP
LVGDNFVWQLFRRRSCCAF

Sequences:

>Translated_339_residues
MPSTTRGKRSGSRDVVKGFFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGIEIIPGPVENNVPDLSGMPVC
ACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFGLTAAGGFLGGGSQEQGNASVDTSTFAQAHYFIYPVWSIME
LLTDFACIEHSGFDVAYLTEVDPLWQNDILAFILEPESILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLT
GHVNDDNELMANSTIAARMVYKLAREGLVCDTALNLCACVPTPIWVKHNWRMHVAKPVRDFMCHPFGRTGLIWGALKNPP
LVGDNFVWQLFRRRSCCAF
>Mature_338_residues
PSTTRGKRSGSRDVVKGFFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGIEIIPGPVENNVPDLSGMPVCA
CPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFGLTAAGGFLGGGSQEQGNASVDTSTFAQAHYFIYPVWSIMEL
LTDFACIEHSGFDVAYLTEVDPLWQNDILAFILEPESILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLTG
HVNDDNELMANSTIAARMVYKLAREGLVCDTALNLCACVPTPIWVKHNWRMHVAKPVRDFMCHPFGRTGLIWGALKNPPL
VGDNFVWQLFRRRSCCAF

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 36916; Mature: 36785

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSTTRGKRSGSRDVVKGFFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCE
EIIPGPVENNVPDLSGMPVCACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFG
EEECCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEECCCHHHHHHHHCCCCCCCCCCCC
LTAAGGFLGGGSQEQGNASVDTSTFAQAHYFIYPVWSIMELLTDFACIEHSGFDVAYLTE
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCCEEEEEC
VDPLWQNDILAFILEPESILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLT
CCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEE
GHVNDDNELMANSTIAARMVYKLAREGLVCDTALNLCACVPTPIWVKHNWRMHVAKPVRD
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCEEEEHHHHHH
FMCHPFGRTGLIWGALKNPPLVGDNFVWQLFRRRSCCAF
HHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PSTTRGKRSGSRDVVKGFFVLLILFHAVGAQAVCRSGIPLNPVTDLCWQCIFPVSIAGI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCE
EIIPGPVENNVPDLSGMPVCACPAPPPLFIRIGIPVSFWEPARYVETVKDPYCFPSLGFG
EEECCCCCCCCCCCCCCCEEECCCCCCEEEEECCCEECCCHHHHHHHHCCCCCCCCCCCC
LTAAGGFLGGGSQEQGNASVDTSTFAQAHYFIYPVWSIMELLTDFACIEHSGFDVAYLTE
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHCCCCCEEEEEC
VDPLWQNDILAFILEPESILFGNPIAQTACIADSVSTNAGFSMSPLFWCIGSGGSAYPLT
CCCCCCCCEEEEEECCCCEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEE
GHVNDDNELMANSTIAARMVYKLAREGLVCDTALNLCACVPTPIWVKHNWRMHVAKPVRD
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCEEEEHHHHHH
FMCHPFGRTGLIWGALKNPPLVGDNFVWQLFRRRSCCAF
HHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]