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The map label for this gene is traB [H]

Identifier: 85859521

GI number: 85859521

Start: 1742432

End: 1743625

Strand: Direct

Name: traB [H]

Synonym: SYN_01863

Alternate gene names: 85859521

Gene position: 1742432-1743625 (Clockwise)

Preceding gene: 85859520

Following gene: 85859522

Centisome position: 54.81

GC content: 60.22

Gene sequence:

>1194_bases
ATGAAAGATAAGTTGAAGACCATCTGGGCGAACGTCACACCGCGGCAAAAGCGGAACCTTGTCCTTCTCGCCATGGCGAC
GGTGGTACTGGCGTTCAGCCTCGCGGGGTACCTTTTCAAGACGAGAGACGGCGGGACGGTTTTGGGGAAATCCGCGCAGA
AAAAGAAGGAAATCACCCTGGACGCCGGGCTCCTGGAAAAATCCGCCTACCTCGAAGGGCGAAAAGAGATCGCCAGGACC
GAGGAGAAGCTCTCGCTTCTCCAGAAAGAACTGGACGAAATCAAGGAAGAGAAGGCGAAGGCCGTCCACGCAGGATCGAA
GCAACCCCTTCCGGCGGTCCCGAAGCCGCCCGATCCATCAAAGGCGATCTCTTACCCCGTTCCGCCTTTGCCGCCTCCAC
CCGTTTCCTCGGCCGATCCATCCAAGGTCGGGCAGGCGTCCAAGCCCGCCGCGGAGACGACGGGTGATATCGAACTCGTC
TCGAATCCACAGGCGCAGAAACAGGATCAGAAGGCCGCCGAGGTAAAAAAAAACGAGAAGGGCGACTCGGTCTATCTGCC
CCCTTCTTTCATGGAGGCGACCCTTCTTTCCGGCCTGGACGCCCCGACGGTGGAGTCGGCCAAGGGGAACCCCGTCCCGG
TTCTCCTGAGGATCAAGGACCTGGCGATCCTCCCCAACAAGGTCAAAGCAGACCTTAAAGGATGCTTCGTCATCGCCGAA
GGACAGGGTAATCTCGCCGACGAGCGGGCGCACCTGAGGCTGGTGAACCTCTCCTGCTTGTCAAGGAAGGGCCAAGCCGT
GATCGACCAGAAGATCAAGGGCTTCGTCGTCGATTCAGACGGGAAGATCGGCCTCAGGGGAACGGTGGTCTCCAAGATGG
GATCGGCAATCGCGCGGTCCGTCCTTGCCGGGTTCTTCGGCGGAGTCGGAGACGCCCTACGGTCCGCCACCATGACCTCC
AGTATCAGCGCGCTCGGCACGACCCAGACCGTGGATCCCGGGCAGATCGCCCAGGCGGGGTTGGGAAGCGGACTCGCCCA
GGGGGCGCACGAGCTCCAGAAGTTTTATCTGGAACTTGCCAAACAGAGCATGCCCGTGATCGAGGTCGGGGCTACGCGAA
ACATCACCCTTGTCGTGAGCGAGGGGGTCGACTTGGAGATCAAGGAAAAACCAGGAGGGAAGAAGCAGAAATGA

Upstream 100 bases:

>100_bases
TCCACCGACCCCATCGCCGTCTCCCTGGACAGGCTTGTCCTGAAAAAGGGGGAGATCCTGAGAGCCTTCGTGGTCGAATC
TCACCGGGAGGAACCGGGCG

Downstream 100 bases:

>100_bases
AACGGGTCCTGTGTCTATTAACGTTAACCGCCCTGCTCGGCGGCTGCTCGGTCTTGAATCCATACAAGAGCGAGTTCACC
TGCCCGCAAAAGGAAAACGG

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKDKLKTIWANVTPRQKRNLVLLAMATVVLAFSLAGYLFKTRDGGTVLGKSAQKKKEITLDAGLLEKSAYLEGRKEIART
EEKLSLLQKELDEIKEEKAKAVHAGSKQPLPAVPKPPDPSKAISYPVPPLPPPPVSSADPSKVGQASKPAAETTGDIELV
SNPQAQKQDQKAAEVKKNEKGDSVYLPPSFMEATLLSGLDAPTVESAKGNPVPVLLRIKDLAILPNKVKADLKGCFVIAE
GQGNLADERAHLRLVNLSCLSRKGQAVIDQKIKGFVVDSDGKIGLRGTVVSKMGSAIARSVLAGFFGGVGDALRSATMTS
SISALGTTQTVDPGQIAQAGLGSGLAQGAHELQKFYLELAKQSMPVIEVGATRNITLVVSEGVDLEIKEKPGGKKQK

Sequences:

>Translated_397_residues
MKDKLKTIWANVTPRQKRNLVLLAMATVVLAFSLAGYLFKTRDGGTVLGKSAQKKKEITLDAGLLEKSAYLEGRKEIART
EEKLSLLQKELDEIKEEKAKAVHAGSKQPLPAVPKPPDPSKAISYPVPPLPPPPVSSADPSKVGQASKPAAETTGDIELV
SNPQAQKQDQKAAEVKKNEKGDSVYLPPSFMEATLLSGLDAPTVESAKGNPVPVLLRIKDLAILPNKVKADLKGCFVIAE
GQGNLADERAHLRLVNLSCLSRKGQAVIDQKIKGFVVDSDGKIGLRGTVVSKMGSAIARSVLAGFFGGVGDALRSATMTS
SISALGTTQTVDPGQIAQAGLGSGLAQGAHELQKFYLELAKQSMPVIEVGATRNITLVVSEGVDLEIKEKPGGKKQK
>Mature_397_residues
MKDKLKTIWANVTPRQKRNLVLLAMATVVLAFSLAGYLFKTRDGGTVLGKSAQKKKEITLDAGLLEKSAYLEGRKEIART
EEKLSLLQKELDEIKEEKAKAVHAGSKQPLPAVPKPPDPSKAISYPVPPLPPPPVSSADPSKVGQASKPAAETTGDIELV
SNPQAQKQDQKAAEVKKNEKGDSVYLPPSFMEATLLSGLDAPTVESAKGNPVPVLLRIKDLAILPNKVKADLKGCFVIAE
GQGNLADERAHLRLVNLSCLSRKGQAVIDQKIKGFVVDSDGKIGLRGTVVSKMGSAIARSVLAGFFGGVGDALRSATMTS
SISALGTTQTVDPGQIAQAGLGSGLAQGAHELQKFYLELAKQSMPVIEVGATRNITLVVSEGVDLEIKEKPGGKKQK

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 42033; Mature: 42033

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDKLKTIWANVTPRQKRNLVLLAMATVVLAFSLAGYLFKTRDGGTVLGKSAQKKKEITL
CCCCHHHHHCCCCCCHHCCEEHHHHHHHHHHHHHHHHHEEECCCCEEECCCCHHHHHEEE
DAGLLEKSAYLEGRKEIARTEEKLSLLQKELDEIKEEKAKAVHAGSKQPLPAVPKPPDPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KAISYPVPPLPPPPVSSADPSKVGQASKPAAETTGDIELVSNPQAQKQDQKAAEVKKNEK
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
GDSVYLPPSFMEATLLSGLDAPTVESAKGNPVPVLLRIKDLAILPNKVKADLKGCFVIAE
CCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHCCCEEEEEEC
GQGNLADERAHLRLVNLSCLSRKGQAVIDQKIKGFVVDSDGKIGLRGTVVSKMGSAIARS
CCCCCCCCCCEEEEEEHHHHCCCCHHHHHHCCCEEEECCCCCEEEHHHHHHHHHHHHHHH
VLAGFFGGVGDALRSATMTSSISALGTTQTVDPGQIAQAGLGSGLAQGAHELQKFYLELA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
KQSMPVIEVGATRNITLVVSEGVDLEIKEKPGGKKQK
HHCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCCC
>Mature Secondary Structure
MKDKLKTIWANVTPRQKRNLVLLAMATVVLAFSLAGYLFKTRDGGTVLGKSAQKKKEITL
CCCCHHHHHCCCCCCHHCCEEHHHHHHHHHHHHHHHHHEEECCCCEEECCCCHHHHHEEE
DAGLLEKSAYLEGRKEIARTEEKLSLLQKELDEIKEEKAKAVHAGSKQPLPAVPKPPDPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
KAISYPVPPLPPPPVSSADPSKVGQASKPAAETTGDIELVSNPQAQKQDQKAAEVKKNEK
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
GDSVYLPPSFMEATLLSGLDAPTVESAKGNPVPVLLRIKDLAILPNKVKADLKGCFVIAE
CCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCEECCCHHHHCCCEEEEEEC
GQGNLADERAHLRLVNLSCLSRKGQAVIDQKIKGFVVDSDGKIGLRGTVVSKMGSAIARS
CCCCCCCCCCEEEEEEHHHHCCCCHHHHHHCCCEEEECCCCCEEEHHHHHHHHHHHHHHH
VLAGFFGGVGDALRSATMTSSISALGTTQTVDPGQIAQAGLGSGLAQGAHELQKFYLELA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHH
KQSMPVIEVGATRNITLVVSEGVDLEIKEKPGGKKQK
HHCCCEEEECCCCCEEEEEECCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]