| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is yrrC [H]
Identifier: 85859423
GI number: 85859423
Start: 1628097
End: 1630358
Strand: Direct
Name: yrrC [H]
Synonym: SYN_01037
Alternate gene names: 85859423
Gene position: 1628097-1630358 (Clockwise)
Preceding gene: 85859422
Following gene: 161347548
Centisome position: 51.21
GC content: 55.48
Gene sequence:
>2262_bases TTGGTGTCGCCACTCCATATTCCCGGAATCTTTAAAATGGAAAAATCCCCGGACAGAACGCATTCCTCGGCAGACCCGCT GGTTGACCTTCAGGGGCACATTGAGCGCGTCAGTTACATCAATGAAGAAAGCGGTTATACCGTTGCCCGGGTGAAGGTAT CCGGCCACCGTGATCCGGTGACGGTGGTGGGCGGCATGATGAACCCCACGCCCGGGGAAAAGGTCCGGATGAAGGGGGAA TGGACGAATCACCCCCGGTTCGGGGAACAGTTCCGTCTCGTGTTCTGCGAATCTTCCGTTCCGGCAACGGCCGTCGGCAT CGAGAAGTATCTGGGATCGGGGCTGATTAAAGGGATTGGCCCCGTCATGGCACGGCGGATGGTGGAGAAGTTCGGCGAGG CCACTCTGGAAATCATCGATCAGGATAGTGCCCGCCTTCAGGAAGTGGAGGGCATCGGTGAAAAACGGATCACCATGATC CGCAGGGCATGGGAAGAACAGCGGGAAATCCGGTCCATCATGATTTTTCTTCAGTCACATGGGGTCAGCGCAGCCTATGC AGCCCGGATCTTCCGTCAGTACGGCAATGCCGCCATAAAGGTGCTTCAGGAAAACCCCTATCGCCTTGCCACGGATATCT TCGGAATCGGGTTTCTCACGGCCGACCGAATCGCTGAAAAGATGGGCTTTGCCCGGGATTCCCATCTCCGTGCGGAAGCG GGAATCCTCTATGTCCTTCATGAACTTTCCGAGGAGGGCCACGTCACTTACCCTGCCGGGCCGCTGATCCGAAAATGTGA GGAAACCCTCGAAATCGATCGGAAATTCATCGCTGCGGCTCTGGAAGGGATTGCCGGAGAGCGACAGATCGTCATTGAAG ACGGAGCATCTTTCCCCGAGGCACTCCCGGACCGGACCGTTTCCCTGGCAAAATATCACCTTTCGGAAACGCAGACCGCA GCCAGGCTGAGGATTCTGCTGAACACTCCGTCAGCTCTCCGTGAAATCGAAACAGAGAAGGCCATCGCCTGGGTGCAGGA AAAATTATCCCTGACTCTGGCGCACAACCAGATCGAGGCGATTCGTGCCGCCGTGTCGAATAAGCTGCTGGTCATAACCG GCGGACCGGGGACAGGGAAAACCACGATTATCAATGCGATCATTCGCATTTTTTCCGCATCGGGGACCAAGATTCTGCTG GCTGCGCCCACGGGGAGGGCGGCCAAACGAATGAGCGAAGCCACAGGGATGGAGGCGAAGACGATTCACCGGCTGCTGGA ATACAGCCCTCAGAAGGGTGGATTCCAGAAAGACGACACATCCCCCCTGGACTGCGAGATGCTGATCGTGGACGAGGCTT CGATGATCGACATCATCCTGATGCATCACCTTGTAAAGGCCATTCCTCTTCCGTCCTCTTTCATCATGATCGGGGATGGC GATCAACTTCCCTCAGTGGGAGCGGGCCGCGTTCTGAATGACGTGATCGAATCGGGTTGCCTGCCTGTGGTGGAATTGCG TGAAATCTTCCGTCAAGCGCGGGAAAGCTCCATTATCAACAATGCCCACGAAATCAACCGGGGGAAATTTCCCCGCCTCC AGCCCCCCGGAGACCGGTTGGATGACTTCTATTTTGTGGAACAGGAAGATCCGGAAAAAGTGGTCGATCTGATTATCCGC CTGGTAAGGGAACGCATTCCCCAGCGTTTCGGGCTTGATCCAATGGAAGACATTCAGGTGCTTACTCCCATGCATCGGGG TCTTGCCGGGGCGGGGAATCTGAACAGCGTCCTGCAGGCGACACTGAATCCCGGTAAAGACGGTCTGCAGAGGGGCGGGA GGTTTTACCTCGTCGGAGACAAGGTCATGCAGATCCGCAATAATTATGACCGCGACGTTTACAACGGCGATATCGGCAGG ATTGTCCGGCTGGACCATGAACTTCAGGAAGCCACCCTGAACTTTGACGGGCGCGAGGTTGTCTATGAGTATGGCGATTT GGAGGAGATTGTCCTGTCGTATGCCGTTTCTGTCCACAAATCACAGGGGGCGGAATATCCCGCCGTGATCATGCCTCTGC TTATGCAGCATTACATGCTTCTTCAGCGGAATCTCCTCTATACGGCGGTTACGCGCGGGAAAAAACTGGTTGTGATTATT GGCTCAAAAAAGGCATTGGCCATCGCCGTCCGTAACAACAAAACACATAAGCGTTTCACACTGCTCAGCCAGCGTTTGCG GAAGGCAATGGCCGAATCATGA
Upstream 100 bases:
>100_bases CGGTGGTGAATTCTGAAGATGCTGCCCCTCAGGAATGCAACAGTTCAGAGTTTGAATTGTTCACGTTACCACCCTGTACA ATCATCACGACATCAAGATT
Downstream 100 bases:
>100_bases ATATCCACCATCAGAAATGGCATTTATGCCGGAAGCAGTGAAGAGATGGCTGCGGATGTTCGTTAGGGGCCAATGTTGAA CATGGCGCAGCGAACCTGGA
Product: exodeoxyribonuclease V subunit alpha
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 753; Mature: 753
Protein sequence:
>753_residues MVSPLHIPGIFKMEKSPDRTHSSADPLVDLQGHIERVSYINEESGYTVARVKVSGHRDPVTVVGGMMNPTPGEKVRMKGE WTNHPRFGEQFRLVFCESSVPATAVGIEKYLGSGLIKGIGPVMARRMVEKFGEATLEIIDQDSARLQEVEGIGEKRITMI RRAWEEQREIRSIMIFLQSHGVSAAYAARIFRQYGNAAIKVLQENPYRLATDIFGIGFLTADRIAEKMGFARDSHLRAEA GILYVLHELSEEGHVTYPAGPLIRKCEETLEIDRKFIAAALEGIAGERQIVIEDGASFPEALPDRTVSLAKYHLSETQTA ARLRILLNTPSALREIETEKAIAWVQEKLSLTLAHNQIEAIRAAVSNKLLVITGGPGTGKTTIINAIIRIFSASGTKILL AAPTGRAAKRMSEATGMEAKTIHRLLEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDG DQLPSVGAGRVLNDVIESGCLPVVELREIFRQARESSIINNAHEINRGKFPRLQPPGDRLDDFYFVEQEDPEKVVDLIIR LVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQATLNPGKDGLQRGGRFYLVGDKVMQIRNNYDRDVYNGDIGR IVRLDHELQEATLNFDGREVVYEYGDLEEIVLSYAVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVII GSKKALAIAVRNNKTHKRFTLLSQRLRKAMAES
Sequences:
>Translated_753_residues MVSPLHIPGIFKMEKSPDRTHSSADPLVDLQGHIERVSYINEESGYTVARVKVSGHRDPVTVVGGMMNPTPGEKVRMKGE WTNHPRFGEQFRLVFCESSVPATAVGIEKYLGSGLIKGIGPVMARRMVEKFGEATLEIIDQDSARLQEVEGIGEKRITMI RRAWEEQREIRSIMIFLQSHGVSAAYAARIFRQYGNAAIKVLQENPYRLATDIFGIGFLTADRIAEKMGFARDSHLRAEA GILYVLHELSEEGHVTYPAGPLIRKCEETLEIDRKFIAAALEGIAGERQIVIEDGASFPEALPDRTVSLAKYHLSETQTA ARLRILLNTPSALREIETEKAIAWVQEKLSLTLAHNQIEAIRAAVSNKLLVITGGPGTGKTTIINAIIRIFSASGTKILL AAPTGRAAKRMSEATGMEAKTIHRLLEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDG DQLPSVGAGRVLNDVIESGCLPVVELREIFRQARESSIINNAHEINRGKFPRLQPPGDRLDDFYFVEQEDPEKVVDLIIR LVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQATLNPGKDGLQRGGRFYLVGDKVMQIRNNYDRDVYNGDIGR IVRLDHELQEATLNFDGREVVYEYGDLEEIVLSYAVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVII GSKKALAIAVRNNKTHKRFTLLSQRLRKAMAES >Mature_753_residues MVSPLHIPGIFKMEKSPDRTHSSADPLVDLQGHIERVSYINEESGYTVARVKVSGHRDPVTVVGGMMNPTPGEKVRMKGE WTNHPRFGEQFRLVFCESSVPATAVGIEKYLGSGLIKGIGPVMARRMVEKFGEATLEIIDQDSARLQEVEGIGEKRITMI RRAWEEQREIRSIMIFLQSHGVSAAYAARIFRQYGNAAIKVLQENPYRLATDIFGIGFLTADRIAEKMGFARDSHLRAEA GILYVLHELSEEGHVTYPAGPLIRKCEETLEIDRKFIAAALEGIAGERQIVIEDGASFPEALPDRTVSLAKYHLSETQTA ARLRILLNTPSALREIETEKAIAWVQEKLSLTLAHNQIEAIRAAVSNKLLVITGGPGTGKTTIINAIIRIFSASGTKILL AAPTGRAAKRMSEATGMEAKTIHRLLEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDG DQLPSVGAGRVLNDVIESGCLPVVELREIFRQARESSIINNAHEINRGKFPRLQPPGDRLDDFYFVEQEDPEKVVDLIIR LVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQATLNPGKDGLQRGGRFYLVGDKVMQIRNNYDRDVYNGDIGR IVRLDHELQEATLNFDGREVVYEYGDLEEIVLSYAVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVII GSKKALAIAVRNNKTHKRFTLLSQRLRKAMAES
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=433, Percent_Identity=27.2517321016166, Blast_Score=124, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 83815; Mature: 83815
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSPLHIPGIFKMEKSPDRTHSSADPLVDLQGHIERVSYINEESGYTVARVKVSGHRDPV CCCCCCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCCCE TVVGGMMNPTPGEKVRMKGEWTNHPRFGEQFRLVFCESSVPATAVGIEKYLGSGLIKGIG EEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHH PVMARRMVEKFGEATLEIIDQDSARLQEVEGIGEKRITMIRRAWEEQREIRSIMIFLQSH HHHHHHHHHHHCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GVSAAYAARIFRQYGNAAIKVLQENPYRLATDIFGIGFLTADRIAEKMGFARDSHLRAEA CCHHHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH GILYVLHELSEEGHVTYPAGPLIRKCEETLEIDRKFIAAALEGIAGERQIVIEDGASFPE HHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH ALPDRTVSLAKYHLSETQTAARLRILLNTPSALREIETEKAIAWVQEKLSLTLAHNQIEA HCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRAAVSNKLLVITGGPGTGKTTIINAIIRIFSASGTKILLAAPTGRAAKRMSEATGMEAK HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCHHH TIHRLLEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDG HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECC DQLPSVGAGRVLNDVIESGCLPVVELREIFRQARESSIINNAHEINRGKFPRLQPPGDRL CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC DDFYFVEQEDPEKVVDLIIRLVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQA CCEEEECCCCHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH TLNPGKDGLQRGGRFYLVGDKVMQIRNNYDRDVYNGDIGRIVRLDHELQEATLNFDGREV HCCCCHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCHHEEEHHHHHHHHHCCCCCCEE VYEYGDLEEIVLSYAVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVII EECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE GSKKALAIAVRNNKTHKRFTLLSQRLRKAMAES ECCCEEEEEEECCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVSPLHIPGIFKMEKSPDRTHSSADPLVDLQGHIERVSYINEESGYTVARVKVSGHRDPV CCCCCCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCEEEEEEECCCCCCE TVVGGMMNPTPGEKVRMKGEWTNHPRFGEQFRLVFCESSVPATAVGIEKYLGSGLIKGIG EEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHH PVMARRMVEKFGEATLEIIDQDSARLQEVEGIGEKRITMIRRAWEEQREIRSIMIFLQSH HHHHHHHHHHHCHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GVSAAYAARIFRQYGNAAIKVLQENPYRLATDIFGIGFLTADRIAEKMGFARDSHLRAEA CCHHHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH GILYVLHELSEEGHVTYPAGPLIRKCEETLEIDRKFIAAALEGIAGERQIVIEDGASFPE HHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH ALPDRTVSLAKYHLSETQTAARLRILLNTPSALREIETEKAIAWVQEKLSLTLAHNQIEA HCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRAAVSNKLLVITGGPGTGKTTIINAIIRIFSASGTKILLAAPTGRAAKRMSEATGMEAK HHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCHHH TIHRLLEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDG HHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECC DQLPSVGAGRVLNDVIESGCLPVVELREIFRQARESSIINNAHEINRGKFPRLQPPGDRL CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCC DDFYFVEQEDPEKVVDLIIRLVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQA CCEEEECCCCHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH TLNPGKDGLQRGGRFYLVGDKVMQIRNNYDRDVYNGDIGRIVRLDHELQEATLNFDGREV HCCCCHHHHHCCCEEEEECHHHHHHHCCCCCCCCCCCCHHEEEHHHHHHHHHCCCCCCEE VYEYGDLEEIVLSYAVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVII EECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE GSKKALAIAVRNNKTHKRFTLLSQRLRKAMAES ECCCEEEEEEECCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]