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The map label for this gene is ydhO [H]

Identifier: 85859145

GI number: 85859145

Start: 1321344

End: 1322171

Strand: Direct

Name: ydhO [H]

Synonym: SYN_01486

Alternate gene names: 85859145

Gene position: 1321344-1322171 (Clockwise)

Preceding gene: 85859125

Following gene: 85859146

Centisome position: 41.56

GC content: 59.54

Gene sequence:

>828_bases
ATGAGGAAGGGAAGGGAAGAAAAAAGGCGGAAAGTTGAAAATCCTGTGAGAATCCTGACAGGCGCGTTCCTGCTGATCGT
CTGTGCCGCGTTTCCGGCCTTTTTCGGGGGCTGTTCATCAAAAACTTACTGGCCCCAGCAGCGGCCTGAAGTGCGCGTCA
AACCAACACCGGCGAAAAAGCTGGCCAACATGGGCTTCACCATTCAGGCCGGGGCCTTTTCCCGGGTCGAAAACGCCGCG
CGGCTGACGGAGGCTCTCCGCCTTCAGGGGCTGGATGCCTATTATTTCGTCCATTCCTCCGGCCTTTACAAGGTCCGTTT
CGGCAACTTTACAGCGAAGGCGCAGGCCCGGAAAAGGGCGGAAACCCTCAGGCAGGCCGGCGTGATTGCCGAGTATTACA
TCGTAACTCCTGAGGAGTACAATGTTGCGCAGCGGCCCCGGCTCGGCGACGACCACTTTCGGGAACAGCTTATCAAAACG
GCGCACAGTTTTATCGGCGTGCCCTATCTCTGGGGCGGAACGTCGCGGGAAAACGGGTTTGACTGCAGCGGCCTGGTCAT
GGCGGTTTACCAGTTGAACGGCCTGGATCTGCCCCGCACCTCCCGGGAGCAGTTTGAAGCGGGGACGCCCGTGGATCGTG
ACTGCCTGCGGAAGGGGGATCTCGTTTTTTTCGCCAACGGCAACGGTGCACCCATCTCCCACGTGGGGATCTATATCGGC
GACGGGCGGTTTATCCACGCGCCGGCCACGGGCAAAAACATCCGCGTCGAATCCCTGGACAGAGACTACTACGCGAGGCG
TTACGCGGGCAGCCGGACGTATCTGTAA

Upstream 100 bases:

>100_bases
GATTACAGGCAATTAATCCGGTTTGAGCTGCATAATCATCTTGCGGATATTGCAGGGATTTGCTAAAAATACCGCTATTT
AAACCTCGGGCGGAGACGGG

Downstream 100 bases:

>100_bases
AATCTTGACTATGGAGACCCGGCAGCGTTTCTTGTCGAAATTACAATCATATACAGATTACACAAGTGAAATTCTGTCAA
CAGGTATGTCACGGAAATCA

Product: cell wall-associated hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MRKGREEKRRKVENPVRILTGAFLLIVCAAFPAFFGGCSSKTYWPQQRPEVRVKPTPAKKLANMGFTIQAGAFSRVENAA
RLTEALRLQGLDAYYFVHSSGLYKVRFGNFTAKAQARKRAETLRQAGVIAEYYIVTPEEYNVAQRPRLGDDHFREQLIKT
AHSFIGVPYLWGGTSRENGFDCSGLVMAVYQLNGLDLPRTSREQFEAGTPVDRDCLRKGDLVFFANGNGAPISHVGIYIG
DGRFIHAPATGKNIRVESLDRDYYARRYAGSRTYL

Sequences:

>Translated_275_residues
MRKGREEKRRKVENPVRILTGAFLLIVCAAFPAFFGGCSSKTYWPQQRPEVRVKPTPAKKLANMGFTIQAGAFSRVENAA
RLTEALRLQGLDAYYFVHSSGLYKVRFGNFTAKAQARKRAETLRQAGVIAEYYIVTPEEYNVAQRPRLGDDHFREQLIKT
AHSFIGVPYLWGGTSRENGFDCSGLVMAVYQLNGLDLPRTSREQFEAGTPVDRDCLRKGDLVFFANGNGAPISHVGIYIG
DGRFIHAPATGKNIRVESLDRDYYARRYAGSRTYL
>Mature_275_residues
MRKGREEKRRKVENPVRILTGAFLLIVCAAFPAFFGGCSSKTYWPQQRPEVRVKPTPAKKLANMGFTIQAGAFSRVENAA
RLTEALRLQGLDAYYFVHSSGLYKVRFGNFTAKAQARKRAETLRQAGVIAEYYIVTPEEYNVAQRPRLGDDHFREQLIKT
AHSFIGVPYLWGGTSRENGFDCSGLVMAVYQLNGLDLPRTSREQFEAGTPVDRDCLRKGDLVFFANGNGAPISHVGIYIG
DGRFIHAPATGKNIRVESLDRDYYARRYAGSRTYL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=111, Percent_Identity=45.945945945946, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786421, Length=267, Percent_Identity=29.9625468164794, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788501, Length=111, Percent_Identity=42.3423423423423, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788001, Length=112, Percent_Identity=41.9642857142857, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30902; Mature: 30902

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKGREEKRRKVENPVRILTGAFLLIVCAAFPAFFGGCSSKTYWPQQRPEVRVKPTPAKK
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHH
LANMGFTIQAGAFSRVENAARLTEALRLQGLDAYYFVHSSGLYKVRFGNFTAKAQARKRA
HHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCEEHHHHHHHHH
ETLRQAGVIAEYYIVTPEEYNVAQRPRLGDDHFREQLIKTAHSFIGVPYLWGGTSRENGF
HHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
DCSGLVMAVYQLNGLDLPRTSREQFEAGTPVDRDCLRKGDLVFFANGNGAPISHVGIYIG
CHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHCCCCEEEEECCCCCCEEEEEEEEE
DGRFIHAPATGKNIRVESLDRDYYARRYAGSRTYL
CCEEEECCCCCCCEEEEECCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MRKGREEKRRKVENPVRILTGAFLLIVCAAFPAFFGGCSSKTYWPQQRPEVRVKPTPAKK
CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHH
LANMGFTIQAGAFSRVENAARLTEALRLQGLDAYYFVHSSGLYKVRFGNFTAKAQARKRA
HHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCEEHHHHHHHHH
ETLRQAGVIAEYYIVTPEEYNVAQRPRLGDDHFREQLIKTAHSFIGVPYLWGGTSRENGF
HHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC
DCSGLVMAVYQLNGLDLPRTSREQFEAGTPVDRDCLRKGDLVFFANGNGAPISHVGIYIG
CHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHCCCCEEEEECCCCCCEEEEEEEEE
DGRFIHAPATGKNIRVESLDRDYYARRYAGSRTYL
CCEEEECCCCCCCEEEEECCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]