| Definition | Syntrophus aciditrophicus SB chromosome, complete genome. |
|---|---|
| Accession | NC_007759 |
| Length | 3,179,300 |
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The map label for this gene is ntrY [H]
Identifier: 85858789
GI number: 85858789
Start: 979407
End: 981629
Strand: Direct
Name: ntrY [H]
Synonym: SYN_02714
Alternate gene names: 85858789
Gene position: 979407-981629 (Clockwise)
Preceding gene: 85858788
Following gene: 85858790
Centisome position: 30.81
GC content: 46.29
Gene sequence:
>2223_bases ATGAACAGGAACAGCCAAATCAAGAATAATATCGACGAAGTGCAGAGGAGGCGCCGTGATCTGATCCTGATTGTCGTGAC GGTGTTGTGCATCCTTGCTTTTTCATTCATCGAACATCACCTTTTTCAAGAGGAATATCTTCTTCCCGAGTCGAATAACA TCCTTATTTTCGGTCTGATCAATATCAATATCATCTTGATCATCCTGCTGATTTTCTTGATTGTCAGGAATGTGGTCAAG CTGGTCTTTGAAAGACGCCAGGGTGTTATCGGGTCAAAAATGAGAACGAAACTGGTGGCCGCCTTCGTTTCTCTTTCCCT CATTCCAACCATCCTGCTCTTTCTGGTATCGATTAACTTTTTATCCTACAGCATCGACAACTGGTTTAATGTCCGGGTGG GTGACGCATTGAATAAAACGATGGAAGTCACCCAGATTTATTACAAGCAATATGAAAAGAATGCGAAGTATCATGCAGGC CAGTTGAGTGCCGATATCATGGAAAATCAGCTTTATGAAAAAGAAAGAGTCGATTATCTGAAGACGCTGGTTGAACAAAG GCAGAAACAGATTAAAACTACAGTCATCGAAATATACGTGGATAACCGGAAGAAAGGGATGGTGTTTCCCGGTCCGGAGC ACGCTGATATCAAAACCATATCTCCTACCCCCCAGGTTATGGAGGAGGTTTTTGCCGGGAATGAGATTTCAATCATCCAG CCTTCGGAGGATGGGGAATTCATCAGCGGATTGTCCCCCATTTATTCCAGTGCAGAGCCTTCTGAAGCTATCGGCGCCGT TGTAGTCAGTTATTATATCCCGAAAGAAATCGTCGACAAAGTTTCGGTGATATCCAGGGCTTCAGAACAATACAGCCAAC TTCATCTCATGAAGAATCCCATCAAAATCAGTTACATCATCACTTTGTCCATTGTGACGCTCCTGATTATTTTTTCCGCT ACCTGGTTTGGCTTGTACATGGCCAAAGGGATTACGGTGCCGATCCTGAATCTTGCCGATGCGACAAGGCGTATTGCCCG GGGGGATCTGAATCACCAGATTGACATTGTCGCTGATGATGAAATCGGAGTTCTTGTTGAAGCCTTCAATTCAATGACCA GAGATTTGAAGCAGAGCAACGAAAATCTCGAACAGGCCAACATGGATCTTGAGCAGAGACGGAAATATATGGCGACGGTT CTTCATAACGTTTCTGCCGGTGTGATTTCCGTTGATGAAGAAGGGTTTATTACGACGATCAACAGAGCAGCGGAAAGAAT GCTCGACATTCGACTGGAAAAGGTAATCAATCGACGATATGAAGACATTCTGTCGACTGAGCATATGAATCTTGCCGAAG ATCTTTTACAAGAACTGGCGAAAAGCGGAAAGAACCAGATCGAAAAACAGATTGAACTGATGCTCAAGGACCGAGTCTTG ACCATTCTCATGACCATGACGCTTGTGAGGGATGGCGAGGGTCATGAGAGAGGGATGGTTGTCGTCTTTGAGGATCTTAC TCAGCTGCAGCAAGCCGAGCGGGCTGCGGCGTGGCGTGAAGTGGCTCGACGGATGGCTCATGAAATCAAGAACCCATTGA CGCCGATTCAGTTGTCTGCCCAGAGGCTCCAGCGCAAGTATGGCGAGCGGTTGGCTGAGGATGGGGCTGTTTTTTATGAA TGCACCCGGACCATTATTGATCAGGTCGAGATTCTGAAAAATCTGGTGAATGAATTTTTCCGTTATGCCCGGATGCCGGT GACGCGTCCCATGCCCAGCAACCTGAATGAAACTGTAACCGATGCCGTTGCTCTTTTCCAGGATGCCCATAAGGACATCA GGTTCGAGTTTAATTTGAGCGAAGAAATGCCGAAGGTGATTCTGGATACAGAGCAGATTAAAAGGGTCATCGTCAACCTG CTGGATAATGCCGTGGCTGCTGTCAGTAAAAATGACGGATGTATAAAAATCAGGACCTTTTACGACAGGATCAACAACCG GGCGATCACGGAGGTTGCCGATAACGGCTGCGGCGTTCCTGCGGGGAATAAGGTAAAGGTGTTTGAACCGTATTTTTCCA CGAAAAAAACCGGAACAGGTCTTGGATTAGCGATTGTCAGCTCCATCATTTCCGATCACAATGGACATATAAAGATCTCC AATAATGCTCCCCGTGGCACGGTTGTCAGGTTTGATCTGCCCGTCCTGGAAAACCTGACATAA
Upstream 100 bases:
>100_bases AGAATTACCGTTTACCTTTTTATGCGAAGTTGATTCGGATTTTTTTATCATTCCGGGATTTTGAAACAGACTGGCAAAGT CAGCCTTTTCATTTTCAGCA
Downstream 100 bases:
>100_bases TGAGGTAACGGGAGAAATATCATTTTGGCTGGTGTTAATGACACCCATAATCTGAGAGAATGTGTTAGAATATAAAAAAT GTTCTACTCATCAAATATTT
Product: signal transduction histidine kinase involved in nitrogen metabolism regulation
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MNRNSQIKNNIDEVQRRRRDLILIVVTVLCILAFSFIEHHLFQEEYLLPESNNILIFGLININIILIILLIFLIVRNVVK LVFERRQGVIGSKMRTKLVAAFVSLSLIPTILLFLVSINFLSYSIDNWFNVRVGDALNKTMEVTQIYYKQYEKNAKYHAG QLSADIMENQLYEKERVDYLKTLVEQRQKQIKTTVIEIYVDNRKKGMVFPGPEHADIKTISPTPQVMEEVFAGNEISIIQ PSEDGEFISGLSPIYSSAEPSEAIGAVVVSYYIPKEIVDKVSVISRASEQYSQLHLMKNPIKISYIITLSIVTLLIIFSA TWFGLYMAKGITVPILNLADATRRIARGDLNHQIDIVADDEIGVLVEAFNSMTRDLKQSNENLEQANMDLEQRRKYMATV LHNVSAGVISVDEEGFITTINRAAERMLDIRLEKVINRRYEDILSTEHMNLAEDLLQELAKSGKNQIEKQIELMLKDRVL TILMTMTLVRDGEGHERGMVVVFEDLTQLQQAERAAAWREVARRMAHEIKNPLTPIQLSAQRLQRKYGERLAEDGAVFYE CTRTIIDQVEILKNLVNEFFRYARMPVTRPMPSNLNETVTDAVALFQDAHKDIRFEFNLSEEMPKVILDTEQIKRVIVNL LDNAVAAVSKNDGCIKIRTFYDRINNRAITEVADNGCGVPAGNKVKVFEPYFSTKKTGTGLGLAIVSSIISDHNGHIKIS NNAPRGTVVRFDLPVLENLT
Sequences:
>Translated_740_residues MNRNSQIKNNIDEVQRRRRDLILIVVTVLCILAFSFIEHHLFQEEYLLPESNNILIFGLININIILIILLIFLIVRNVVK LVFERRQGVIGSKMRTKLVAAFVSLSLIPTILLFLVSINFLSYSIDNWFNVRVGDALNKTMEVTQIYYKQYEKNAKYHAG QLSADIMENQLYEKERVDYLKTLVEQRQKQIKTTVIEIYVDNRKKGMVFPGPEHADIKTISPTPQVMEEVFAGNEISIIQ PSEDGEFISGLSPIYSSAEPSEAIGAVVVSYYIPKEIVDKVSVISRASEQYSQLHLMKNPIKISYIITLSIVTLLIIFSA TWFGLYMAKGITVPILNLADATRRIARGDLNHQIDIVADDEIGVLVEAFNSMTRDLKQSNENLEQANMDLEQRRKYMATV LHNVSAGVISVDEEGFITTINRAAERMLDIRLEKVINRRYEDILSTEHMNLAEDLLQELAKSGKNQIEKQIELMLKDRVL TILMTMTLVRDGEGHERGMVVVFEDLTQLQQAERAAAWREVARRMAHEIKNPLTPIQLSAQRLQRKYGERLAEDGAVFYE CTRTIIDQVEILKNLVNEFFRYARMPVTRPMPSNLNETVTDAVALFQDAHKDIRFEFNLSEEMPKVILDTEQIKRVIVNL LDNAVAAVSKNDGCIKIRTFYDRINNRAITEVADNGCGVPAGNKVKVFEPYFSTKKTGTGLGLAIVSSIISDHNGHIKIS NNAPRGTVVRFDLPVLENLT >Mature_740_residues MNRNSQIKNNIDEVQRRRRDLILIVVTVLCILAFSFIEHHLFQEEYLLPESNNILIFGLININIILIILLIFLIVRNVVK LVFERRQGVIGSKMRTKLVAAFVSLSLIPTILLFLVSINFLSYSIDNWFNVRVGDALNKTMEVTQIYYKQYEKNAKYHAG QLSADIMENQLYEKERVDYLKTLVEQRQKQIKTTVIEIYVDNRKKGMVFPGPEHADIKTISPTPQVMEEVFAGNEISIIQ PSEDGEFISGLSPIYSSAEPSEAIGAVVVSYYIPKEIVDKVSVISRASEQYSQLHLMKNPIKISYIITLSIVTLLIIFSA TWFGLYMAKGITVPILNLADATRRIARGDLNHQIDIVADDEIGVLVEAFNSMTRDLKQSNENLEQANMDLEQRRKYMATV LHNVSAGVISVDEEGFITTINRAAERMLDIRLEKVINRRYEDILSTEHMNLAEDLLQELAKSGKNQIEKQIELMLKDRVL TILMTMTLVRDGEGHERGMVVVFEDLTQLQQAERAAAWREVARRMAHEIKNPLTPIQLSAQRLQRKYGERLAEDGAVFYE CTRTIIDQVEILKNLVNEFFRYARMPVTRPMPSNLNETVTDAVALFQDAHKDIRFEFNLSEEMPKVILDTEQIKRVIVNL LDNAVAAVSKNDGCIKIRTFYDRINNRAITEVADNGCGVPAGNKVKVFEPYFSTKKTGTGLGLAIVSSIISDHNGHIKIS NNAPRGTVVRFDLPVLENLT
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=405, Percent_Identity=28.8888888888889, Blast_Score=161, Evalue=2e-40, Organism=Escherichia coli, GI1790300, Length=344, Percent_Identity=26.7441860465116, Blast_Score=112, Evalue=7e-26, Organism=Escherichia coli, GI1790436, Length=230, Percent_Identity=27.8260869565217, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI1789808, Length=216, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=5e-15, Organism=Escherichia coli, GI87081816, Length=227, Percent_Identity=26.431718061674, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1786600, Length=253, Percent_Identity=24.901185770751, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI48994928, Length=399, Percent_Identity=21.8045112781955, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 84167; Mature: 84167
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRNSQIKNNIDEVQRRRRDLILIVVTVLCILAFSFIEHHLFQEEYLLPESNNILIFGLI CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHH NINIILIILLIFLIVRNVVKLVFERRQGVIGSKMRTKLVAAFVSLSLIPTILLFLVSINF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSYSIDNWFNVRVGDALNKTMEVTQIYYKQYEKNAKYHAGQLSADIMENQLYEKERVDYL HHEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH KTLVEQRQKQIKTTVIEIYVDNRKKGMVFPGPEHADIKTISPTPQVMEEVFAGNEISIIQ HHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEC PSEDGEFISGLSPIYSSAEPSEAIGAVVVSYYIPKEIVDKVSVISRASEQYSQLHLMKNP CCCCCCHHHCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC IKISYIITLSIVTLLIIFSATWFGLYMAKGITVPILNLADATRRIARGDLNHQIDIVADD EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCEEEEEECC EIGVLVEAFNSMTRDLKQSNENLEQANMDLEQRRKYMATVLHNVSAGVISVDEEGFITTI CHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH NRAAERMLDIRLEKVINRRYEDILSTEHMNLAEDLLQELAKSGKNQIEKQIELMLKDRVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TILMTMTLVRDGEGHERGMVVVFEDLTQLQQAERAAAWREVARRMAHEIKNPLTPIQLSA HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH QRLQRKYGERLAEDGAVFYECTRTIIDQVEILKNLVNEFFRYARMPVTRPMPSNLNETVT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH DAVALFQDAHKDIRFEFNLSEEMPKVILDTEQIKRVIVNLLDNAVAAVSKNDGCIKIRTF HHHHHHHHHCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH YDRINNRAITEVADNGCGVPAGNKVKVFEPYFSTKKTGTGLGLAIVSSIISDHNGHIKIS HHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC NNAPRGTVVRFDLPVLENLT CCCCCCEEEEECCHHHCCCC >Mature Secondary Structure MNRNSQIKNNIDEVQRRRRDLILIVVTVLCILAFSFIEHHLFQEEYLLPESNNILIFGLI CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHH NINIILIILLIFLIVRNVVKLVFERRQGVIGSKMRTKLVAAFVSLSLIPTILLFLVSINF HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSYSIDNWFNVRVGDALNKTMEVTQIYYKQYEKNAKYHAGQLSADIMENQLYEKERVDYL HHEECCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH KTLVEQRQKQIKTTVIEIYVDNRKKGMVFPGPEHADIKTISPTPQVMEEVFAGNEISIIQ HHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCEEEEC PSEDGEFISGLSPIYSSAEPSEAIGAVVVSYYIPKEIVDKVSVISRASEQYSQLHLMKNP CCCCCCHHHCCCHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC IKISYIITLSIVTLLIIFSATWFGLYMAKGITVPILNLADATRRIARGDLNHQIDIVADD EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCEEEEEECC EIGVLVEAFNSMTRDLKQSNENLEQANMDLEQRRKYMATVLHNVSAGVISVDEEGFITTI CHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH NRAAERMLDIRLEKVINRRYEDILSTEHMNLAEDLLQELAKSGKNQIEKQIELMLKDRVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TILMTMTLVRDGEGHERGMVVVFEDLTQLQQAERAAAWREVARRMAHEIKNPLTPIQLSA HHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH QRLQRKYGERLAEDGAVFYECTRTIIDQVEILKNLVNEFFRYARMPVTRPMPSNLNETVT HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH DAVALFQDAHKDIRFEFNLSEEMPKVILDTEQIKRVIVNLLDNAVAAVSKNDGCIKIRTF HHHHHHHHHCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH YDRINNRAITEVADNGCGVPAGNKVKVFEPYFSTKKTGTGLGLAIVSSIISDHNGHIKIS HHHHCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEC NNAPRGTVVRFDLPVLENLT CCCCCCEEEEECCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]