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The map label for this gene is degT [H]

Identifier: 85375485

GI number: 85375485

Start: 2676170

End: 2677294

Strand: Direct

Name: degT [H]

Synonym: ELI_13290

Alternate gene names: 85375485

Gene position: 2676170-2677294 (Clockwise)

Preceding gene: 85375484

Following gene: 85375486

Centisome position: 87.67

GC content: 59.73

Gene sequence:

>1125_bases
ATGCAATTCATCGATCTCAAATCGCAATACCTGGAGCTGCAGGATGAAATACGCCAGCGAATCGACGACGTTCTCGATCG
GCAGGCTTTCATCCAGGGCCCAGAAGTAAAAGAACTCGAGGCTGCGCTGGCCAAGTTCTGCGGCGCGAAGCGCGTAGTCA
CCTGCGCTAACGGCACGGATGCCTTGCAGCTGGCATTGATGGCGCTGGACATCGGGCCGGGCGACGCGGTTTTCGTGCCG
AGCTTTACATATACTGCGACGGCCGAGGTTATTCTTCTCCTGGGCGCGCGGCCGGTGTTCGTCGATTCCGATCCTGATAC
CTTCAACATATGCTTCGACAGCGCGGAGAAAGCGATCGAGCGCACCAAGGCGGAAGGAAAGTATCGTGCTGCAGCGTTGA
TGACGGTCGACCTGTTCGGACAGCCGGTAGATTATGATCGAGCGCGCAGCCTTGCCGATACGCACGACCTCGCCTTCATC
TCCGACGCCGCGCAGGGTTTTGGTGGGACTTACAAGGGCCGCCGGGTAGGGTCCGGCCTCGCCGATATTACAACCACGAG
CTTCTTCCCGGCCAAACCGCTGGGTTGCTATGGTGACGGCGGCGCCGTGTTCACCGACAACGATGAATGGGCCGATGCGA
TGAAGTCGATCTGCCTGCACGGTAAGGGTGCTGCCAAATACGATGTTGTCCGTGTCGGTGTGAACAGCCGTCTCGACACG
CTGCAAGCGGCGATCCTCCTGCCCAAACTGGCTGCTTTTGCCGATGAGCTGGAAAAGCGCCATGAAGTGGCCCGTTCTTA
CAGCGAAGGCCTTGCCAATCACGTCCAGACGCCGATTTTGGCCGAGGGGGACGAAAGGTTCGCTTGGGCGCAATACACGA
TCAAGGTGGAAGACCGCGACGATGTACAGCAGCGGCTGAAGGATGCCGGCGTGCCGGCCAACGTATATTATCCGCGCCCG
ATGCATCTGCAGCCAGCCTACCTTGAGTTCGGGGATGGCGAAGGTTCGCTACCGGTGGCCGAGCGACTCTCCGAAATCGT
GCTGAGCTTGCCCATGCACCCCTACCTTTCCAGCGACGAAACCAGCCAGGTCGTTGACGCCGTGATCTCGGCCGTGCGCG
CCTGA

Upstream 100 bases:

>100_bases
GACCGATCTTGCCGAAGACGCGATCGTCAGTGGCAATTTCGCCGTTCCCCACGATCGTTTCCTCGATCACATCCGTTCCA
TCCGATAATCTGGATCAGAC

Downstream 100 bases:

>100_bases
TTTTACCAGCTACCAGGACATTACATCATGACAGCGACCCTCTCGTCCATCGCGCGCGAAACGATTGCCCGCTTCGAGAA
CAAATCGGCGAAGATCGGCA

Product: DegT/DnrJ/EryC1/StrS family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MQFIDLKSQYLELQDEIRQRIDDVLDRQAFIQGPEVKELEAALAKFCGAKRVVTCANGTDALQLALMALDIGPGDAVFVP
SFTYTATAEVILLLGARPVFVDSDPDTFNICFDSAEKAIERTKAEGKYRAAALMTVDLFGQPVDYDRARSLADTHDLAFI
SDAAQGFGGTYKGRRVGSGLADITTTSFFPAKPLGCYGDGGAVFTDNDEWADAMKSICLHGKGAAKYDVVRVGVNSRLDT
LQAAILLPKLAAFADELEKRHEVARSYSEGLANHVQTPILAEGDERFAWAQYTIKVEDRDDVQQRLKDAGVPANVYYPRP
MHLQPAYLEFGDGEGSLPVAERLSEIVLSLPMHPYLSSDETSQVVDAVISAVRA

Sequences:

>Translated_374_residues
MQFIDLKSQYLELQDEIRQRIDDVLDRQAFIQGPEVKELEAALAKFCGAKRVVTCANGTDALQLALMALDIGPGDAVFVP
SFTYTATAEVILLLGARPVFVDSDPDTFNICFDSAEKAIERTKAEGKYRAAALMTVDLFGQPVDYDRARSLADTHDLAFI
SDAAQGFGGTYKGRRVGSGLADITTTSFFPAKPLGCYGDGGAVFTDNDEWADAMKSICLHGKGAAKYDVVRVGVNSRLDT
LQAAILLPKLAAFADELEKRHEVARSYSEGLANHVQTPILAEGDERFAWAQYTIKVEDRDDVQQRLKDAGVPANVYYPRP
MHLQPAYLEFGDGEGSLPVAERLSEIVLSLPMHPYLSSDETSQVVDAVISAVRA
>Mature_374_residues
MQFIDLKSQYLELQDEIRQRIDDVLDRQAFIQGPEVKELEAALAKFCGAKRVVTCANGTDALQLALMALDIGPGDAVFVP
SFTYTATAEVILLLGARPVFVDSDPDTFNICFDSAEKAIERTKAEGKYRAAALMTVDLFGQPVDYDRARSLADTHDLAFI
SDAAQGFGGTYKGRRVGSGLADITTTSFFPAKPLGCYGDGGAVFTDNDEWADAMKSICLHGKGAAKYDVVRVGVNSRLDT
LQAAILLPKLAAFADELEKRHEVARSYSEGLANHVQTPILAEGDERFAWAQYTIKVEDRDDVQQRLKDAGVPANVYYPRP
MHLQPAYLEFGDGEGSLPVAERLSEIVLSLPMHPYLSSDETSQVVDAVISAVRA

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=367, Percent_Identity=31.6076294277929, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI2367285, Length=356, Percent_Identity=30.3370786516854, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40795; Mature: 40795

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFIDLKSQYLELQDEIRQRIDDVLDRQAFIQGPEVKELEAALAKFCGAKRVVTCANGTD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCH
ALQLALMALDIGPGDAVFVPSFTYTATAEVILLLGARPVFVDSDPDTFNICFDSAEKAIE
HHHHHHHHEECCCCCEEEECCCCHHHHHHHHHEECCCEEEECCCCCEEEEEHHHHHHHHH
RTKAEGKYRAAALMTVDLFGQPVDYDRARSLADTHDLAFISDAAQGFGGTYKGRRVGSGL
HHHCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
ADITTTSFFPAKPLGCYGDGGAVFTDNDEWADAMKSICLHGKGAAKYDVVRVGVNSRLDT
HHHHCCCCCCCCCCCEECCCCCEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
LQAAILLPKLAAFADELEKRHEVARSYSEGLANHVQTPILAEGDERFAWAQYTIKVEDRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEEEEECCHH
DVQQRLKDAGVPANVYYPRPMHLQPAYLEFGDGEGSLPVAERLSEIVLSLPMHPYLSSDE
HHHHHHHHCCCCCEEECCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCH
TSQVVDAVISAVRA
HHHHHHHHHHHHCC
>Mature Secondary Structure
MQFIDLKSQYLELQDEIRQRIDDVLDRQAFIQGPEVKELEAALAKFCGAKRVVTCANGTD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCH
ALQLALMALDIGPGDAVFVPSFTYTATAEVILLLGARPVFVDSDPDTFNICFDSAEKAIE
HHHHHHHHEECCCCCEEEECCCCHHHHHHHHHEECCCEEEECCCCCEEEEEHHHHHHHHH
RTKAEGKYRAAALMTVDLFGQPVDYDRARSLADTHDLAFISDAAQGFGGTYKGRRVGSGL
HHHCCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
ADITTTSFFPAKPLGCYGDGGAVFTDNDEWADAMKSICLHGKGAAKYDVVRVGVNSRLDT
HHHHCCCCCCCCCCCEECCCCCEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHH
LQAAILLPKLAAFADELEKRHEVARSYSEGLANHVQTPILAEGDERFAWAQYTIKVEDRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEEEEECCHH
DVQQRLKDAGVPANVYYPRPMHLQPAYLEFGDGEGSLPVAERLSEIVLSLPMHPYLSSDE
HHHHHHHHCCCCCEEECCCCCCCCCHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCH
TSQVVDAVISAVRA
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]