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The map label for this gene is ihfB [H]

Identifier: 85375322

GI number: 85375322

Start: 2524972

End: 2525250

Strand: Reverse

Name: ihfB [H]

Synonym: ELI_12475

Alternate gene names: 85375322

Gene position: 2525250-2524972 (Counterclockwise)

Preceding gene: 85375323

Following gene: 85375321

Centisome position: 82.73

GC content: 62.72

Gene sequence:

>279_bases
ATGATCCGTTCGGAACTGCTTCAGGCTTTGGCGCGCGACAATCCGGATTTGCGCGCGGAAGAGATTGAGCAAGTCGTCGA
CATCTTCTTCGACGAAATCTCGCGCAGGCTGGTGGAAGGCGGGCGCGTCGAACTGCGCGGCTTCGGGGCATTCTCGACCC
GCGAACGCGAAGCGCGGCAAGGGCGCAACCCGCGCACCGGCGAACCGGTCAGTGTGCCGGCCAAGCGCGTGCCCTATTTC
AAACCGGGCAAGGAAATGCGCAACGCGCTCAACGAGTAA

Upstream 100 bases:

>100_bases
CTGACTTTCCGGCAGGGGCTAAGCCGCTGCTGGATATTTTCGGGAGTGGGGCCCACACAGGCTGACCGTGCTCATCGGGT
GAGATGGTCGGGAGAAAAAT

Downstream 100 bases:

>100_bases
GCGCGCGCACCGGACAACGTATCTTTCATAGCTTCCGGCATCCCGCTAGGGATCGCTCGCGCATGGGCGATCCCCATCGC
GACGACGGGTTCGCGGGTGT

Product: integration host factor beta-subunit

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQGRNPRTGEPVSVPAKRVPYF
KPGKEMRNALNE

Sequences:

>Translated_92_residues
MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQGRNPRTGEPVSVPAKRVPYF
KPGKEMRNALNE
>Mature_92_residues
MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQGRNPRTGEPVSVPAKRVPYF
KPGKEMRNALNE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=42.8571428571429, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1788005, Length=88, Percent_Identity=37.5, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10570; Mature: 10570

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHC
GRNPRTGEPVSVPAKRVPYFKPGKEMRNALNE
CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ
CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHC
GRNPRTGEPVSVPAKRVPYFKPGKEMRNALNE
CCCCCCCCCCCCCHHHCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA