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The map label for this gene is ycjD [H]

Identifier: 85375153

GI number: 85375153

Start: 2343829

End: 2344275

Strand: Reverse

Name: ycjD [H]

Synonym: ELI_11630

Alternate gene names: 85375153

Gene position: 2344275-2343829 (Counterclockwise)

Preceding gene: 85375154

Following gene: 85375152

Centisome position: 76.8

GC content: 60.63

Gene sequence:

>447_bases
GTGAGGCAGTACAGTCGCGGTCATTCCGGCATCGTCGATCGCGCGCGCAAGCTGCGACGCGATATGACGGATGCGGAAAA
GCTGCTTTGGCTGAAACTGCGCAAGGCGTTTCCGAACGCCAAGTTTCGGCGTCAGTCTCCGGTCCCGCCCTACTGCGCCG
ACTTCCTGAGTTATCGGCACAGGCTCATAATCGAGGCCGATGGTGGCCAGCATGATCCAGGCAGCCCTGTCGAGATTGCC
CGCACCCGTTTCCTTGAAGAGCAAGGCTTCACGGTCCTGCGCTTCTGGAACAACGACATCCTTGCCAACATCGACGGCGT
ATTGGAGACTATCAGGCAAGCCATTGGTGGAAGCGATCATGCCAAGCGATCCTCACCCTCCCCACGCTTCGCGCCGGGCC
CCTCCCTCTCCCGGTGGGAGAGGGAAAGAGCACCGAAGGTGCGATAG

Upstream 100 bases:

>100_bases
CTGCCGCTTTTGACCCTCACCCTCCCAGCGCTGCGCGCCGGGCCCCTCCCTCTCCCGGTGGGAGAGGGAAAGAGCGCCGC
AGGCGTGAAAGGGTGAGGGT

Downstream 100 bases:

>100_bases
GGTGAGGGTCGTTGGCCTGGCGGTCGCCACCCTGCTCCTCACCGCCTGCGCTTCGCAAATCGACGCGGGCGTAACCAAGA
CCGCTGGCAGCCCCGGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRQYSRGHSGIVDRARKLRRDMTDAEKLLWLKLRKAFPNAKFRRQSPVPPYCADFLSYRHRLIIEADGGQHDPGSPVEIA
RTRFLEEQGFTVLRFWNNDILANIDGVLETIRQAIGGSDHAKRSSPSPRFAPGPSLSRWERERAPKVR

Sequences:

>Translated_148_residues
MRQYSRGHSGIVDRARKLRRDMTDAEKLLWLKLRKAFPNAKFRRQSPVPPYCADFLSYRHRLIIEADGGQHDPGSPVEIA
RTRFLEEQGFTVLRFWNNDILANIDGVLETIRQAIGGSDHAKRSSPSPRFAPGPSLSRWERERAPKVR
>Mature_148_residues
MRQYSRGHSGIVDRARKLRRDMTDAEKLLWLKLRKAFPNAKFRRQSPVPPYCADFLSYRHRLIIEADGGQHDPGSPVEIA
RTRFLEEQGFTVLRFWNNDILANIDGVLETIRQAIGGSDHAKRSSPSPRFAPGPSLSRWERERAPKVR

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=119, Percent_Identity=47.8991596638655, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 17066; Mature: 17066

Theoretical pI: Translated: 11.24; Mature: 11.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQYSRGHSGIVDRARKLRRDMTDAEKLLWLKLRKAFPNAKFRRQSPVPPYCADFLSYRH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
RLIIEADGGQHDPGSPVEIARTRFLEEQGFTVLRFWNNDILANIDGVLETIRQAIGGSDH
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
AKRSSPSPRFAPGPSLSRWERERAPKVR
CCCCCCCCCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MRQYSRGHSGIVDRARKLRRDMTDAEKLLWLKLRKAFPNAKFRRQSPVPPYCADFLSYRH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
RLIIEADGGQHDPGSPVEIARTRFLEEQGFTVLRFWNNDILANIDGVLETIRQAIGGSDH
EEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCC
AKRSSPSPRFAPGPSLSRWERERAPKVR
CCCCCCCCCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]