Click here to switch to the map view.

The map label for this gene is allS [H]

Identifier: 85374504

GI number: 85374504

Start: 1716138

End: 1717040

Strand: Reverse

Name: allS [H]

Synonym: ELI_08385

Alternate gene names: 85374504

Gene position: 1717040-1716138 (Counterclockwise)

Preceding gene: 85374507

Following gene: 85374499

Centisome position: 56.25

GC content: 68.77

Gene sequence:

>903_bases
ATGAAGATCGGCGAGCCGAGCCTCGATCAGCTACGCATCTTCCTCGCGGTGGAAGAGGCGGGCAGTTTCGGCGGCGCTGC
GCGCGCCATGGGCCGCGCGGTCTCGGCGATCAGCTACGGCATCGCGCAGATGGAAGCCCAGCTCGGCGTGACGCTGTTCG
AGCGCGAGGGCTCGCGCAAGCCCGTGCTGACCGAAGCCGGGCGCGGCCTGCTACCTGAAGCGCGCGCCATCGCCGACCGC
GCGGATGCTCTGCTGGCCAAGACGCGCAGCCTGCAGGCCGGGCTGGAAAGCGATGTCGGGCTGGTGGTGGACGTCATGGT
CCCCGGCGAAGCGACTGCGCGGGTATTGCGCGAATTTCGGGCCATGTTCCCGACCGTGGCGCTGCGATTGCAGGTCGAGG
GGCTGGGCGCGGTTGCCGCATGCCTCCTCGAACGCTCGTCCGAACTCGCCATCGGCGGTCCGGTGATCGGCGACCACCCC
GAGCTGGAAAGGCAAGTTATCGGCGAGGTCGAACTCGTCCCCGTCGCCGCGCCGGATCACCCGCTGGCGCGTTCCGATGT
CGCGCCGGGCGAGAGCCGCGAGCACTTGCAACTCATTCTCACCGACCGATCGAAACTGACCGACGGCCGCGAATTTTCCG
TGCTGAGTCCTCTCAGCTGGCGGCTGGGCGATCTCGGCGCGAAACACGCGCTGCTCAAGCAGGGTATCGGCTGGGGCAAC
ATGCCCCGCCCGATGGTGGCGGGCGATTTGGCCGGTGGAGCGCTGGTCGCGCTGGACCTTCCGGAAAAGCCCGGCACCGG
GTACCAACTCAGCGCGATCTGGCGGCGGGATACCACGCCCGGCCCGGCGACCAGCTGGCTGATCGATACGTTCAGAGAGC
GGCTGGCGGATTGCCCGGCCTAG

Upstream 100 bases:

>100_bases
GTCTCCTGCGGGAGTGTGCTTGTGTGACGCCGAAATAGGACTTGTCCGGTAATCCGATAAGTGAGATAAAACGCGCCGAA
ATGTTCAGAGAATCCGAACG

Downstream 100 bases:

>100_bases
GCGGCGAAGACGACAGGTTCGTCACCGTCTCGCCACGGCGCAAACTTCGGCATGATGGCGGCGAACAGGTCGGAAGCGAG
ATGACCGTCGAGCCAGCTTT

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MKIGEPSLDQLRIFLAVEEAGSFGGAARAMGRAVSAISYGIAQMEAQLGVTLFEREGSRKPVLTEAGRGLLPEARAIADR
ADALLAKTRSLQAGLESDVGLVVDVMVPGEATARVLREFRAMFPTVALRLQVEGLGAVAACLLERSSELAIGGPVIGDHP
ELERQVIGEVELVPVAAPDHPLARSDVAPGESREHLQLILTDRSKLTDGREFSVLSPLSWRLGDLGAKHALLKQGIGWGN
MPRPMVAGDLAGGALVALDLPEKPGTGYQLSAIWRRDTTPGPATSWLIDTFRERLADCPA

Sequences:

>Translated_300_residues
MKIGEPSLDQLRIFLAVEEAGSFGGAARAMGRAVSAISYGIAQMEAQLGVTLFEREGSRKPVLTEAGRGLLPEARAIADR
ADALLAKTRSLQAGLESDVGLVVDVMVPGEATARVLREFRAMFPTVALRLQVEGLGAVAACLLERSSELAIGGPVIGDHP
ELERQVIGEVELVPVAAPDHPLARSDVAPGESREHLQLILTDRSKLTDGREFSVLSPLSWRLGDLGAKHALLKQGIGWGN
MPRPMVAGDLAGGALVALDLPEKPGTGYQLSAIWRRDTTPGPATSWLIDTFRERLADCPA
>Mature_300_residues
MKIGEPSLDQLRIFLAVEEAGSFGGAARAMGRAVSAISYGIAQMEAQLGVTLFEREGSRKPVLTEAGRGLLPEARAIADR
ADALLAKTRSLQAGLESDVGLVVDVMVPGEATARVLREFRAMFPTVALRLQVEGLGAVAACLLERSSELAIGGPVIGDHP
ELERQVIGEVELVPVAAPDHPLARSDVAPGESREHLQLILTDRSKLTDGREFSVLSPLSWRLGDLGAKHALLKQGIGWGN
MPRPMVAGDLAGGALVALDLPEKPGTGYQLSAIWRRDTTPGPATSWLIDTFRERLADCPA

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=291, Percent_Identity=28.8659793814433, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786508, Length=295, Percent_Identity=27.1186440677966, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787949, Length=293, Percent_Identity=27.9863481228669, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786713, Length=301, Percent_Identity=26.9102990033223, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693105, Length=184, Percent_Identity=27.1739130434783, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082024, Length=299, Percent_Identity=25.752508361204, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786401, Length=310, Percent_Identity=25.1612903225806, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788481, Length=269, Percent_Identity=30.1115241635688, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31875; Mature: 31875

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGEPSLDQLRIFLAVEEAGSFGGAARAMGRAVSAISYGIAQMEAQLGVTLFEREGSRK
CCCCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCC
PVLTEAGRGLLPEARAIADRADALLAKTRSLQAGLESDVGLVVDVMVPGEATARVLREFR
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHH
AMFPTVALRLQVEGLGAVAACLLERSSELAIGGPVIGDHPELERQVIGEVELVPVAAPDH
HHHHHEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHCCEEEEEECCCCC
PLARSDVAPGESREHLQLILTDRSKLTDGREFSVLSPLSWRLGDLGAKHALLKQGIGWGN
CCCCCCCCCCCCCCEEEEEEECCHHCCCCCCEEEECCCHHHHHHCCHHHHHHHHCCCCCC
MPRPMVAGDLAGGALVALDLPEKPGTGYQLSAIWRRDTTPGPATSWLIDTFRERLADCPA
CCCCCEECCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKIGEPSLDQLRIFLAVEEAGSFGGAARAMGRAVSAISYGIAQMEAQLGVTLFEREGSRK
CCCCCCCHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCC
PVLTEAGRGLLPEARAIADRADALLAKTRSLQAGLESDVGLVVDVMVPGEATARVLREFR
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHH
AMFPTVALRLQVEGLGAVAACLLERSSELAIGGPVIGDHPELERQVIGEVELVPVAAPDH
HHHHHEEEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHCCEEEEEECCCCC
PLARSDVAPGESREHLQLILTDRSKLTDGREFSVLSPLSWRLGDLGAKHALLKQGIGWGN
CCCCCCCCCCCCCCEEEEEEECCHHCCCCCCEEEECCCHHHHHHCCHHHHHHHHCCCCCC
MPRPMVAGDLAGGALVALDLPEKPGTGYQLSAIWRRDTTPGPATSWLIDTFRERLADCPA
CCCCCEECCCCCCEEEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA