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The map label for this gene is yqxC [H]

Identifier: 85374499

GI number: 85374499

Start: 1711421

End: 1712164

Strand: Reverse

Name: yqxC [H]

Synonym: ELI_08360

Alternate gene names: 85374499

Gene position: 1712164-1711421 (Counterclockwise)

Preceding gene: 85374504

Following gene: 85374498

Centisome position: 56.09

GC content: 66.53

Gene sequence:

>744_bases
ATGCCGAACAAACAGCGTATCGACCAATTGCTGGTGGCCCGCGGGCTCGCCGAAAGCCGCACCCGCGCGCAGGCGCTGGT
GATGGCGGGGATCGTGTTCTCCGGCGAGACGAAGATCGCGAAGCCGGGCCAGCAACTGCCAGAGGACGCGCCGGTCGAAG
TGCGCGGGCGCGACCATCCATGGGTCAGTCGCGGCGGGCTCAAGCTGGCGCACGCGCTGGAGCACTTCGAGCTCGATCCT
GCGGGCGTCACGGCGATGGATGTCGGCAGCTCGACCGGCGGTTTCACCGATGTGTTGCTCAAGAACGGCGCCGCGCATGT
GATCGCGGTCGACAGCGGGACCAACCAGCTGGCGTGGAAGCTGCGGCAGGACGAGCGCGTGAGCGTCATGGAGCAAACCA
GCGCACGCATCCTCACGCGCGAGATGATCCCGCAGCCCTATAGCTGGGTCGTGTGCGATGCGAGCTTCATCGGCCTTGCC
AAAGTGCTCGAAGTACCGCTCGCGCTGGCCGAGACCCAATGCCAGCTGGTCGCGCTGATAAAGCCGCAGTTCGAGGTCGG
GCGCGATGAAGTGGGCAAGGGCGGCGTGGTGCGCGACCCGTCGCTGCATGCCCGGGTTTGCGACGACGTGCGCGGCTGGC
TCGAAGGAGAGAGCTGGCACGTGAAAGGCATCGTCGAAAGTCCGATCACCGGGCCGGAAGGCAATGTCGAGTTCCTGATC
GCCGCCCGGCGCATGGGCGAATAG

Upstream 100 bases:

>100_bases
GGGATAGCGGATCATATGAGTCAGTCGGCTTTGCATGCTTCACCAATGCGCGCTAACCGCCGATGGGTCCAAGGAAAATC
GCACGAGCCCGTCTCGCCCC

Downstream 100 bases:

>100_bases
CGCGGCGGGCGGCTCGATAAGGGACAGGCTGTGCGTTTGGCGCGGGATATGGCGCAGCGCTGCTTGCTATGCCCCGCGCA
CCTAGGCAAACAGCGGCGCG

Product: hemolysin HlyA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MPNKQRIDQLLVARGLAESRTRAQALVMAGIVFSGETKIAKPGQQLPEDAPVEVRGRDHPWVSRGGLKLAHALEHFELDP
AGVTAMDVGSSTGGFTDVLLKNGAAHVIAVDSGTNQLAWKLRQDERVSVMEQTSARILTREMIPQPYSWVVCDASFIGLA
KVLEVPLALAETQCQLVALIKPQFEVGRDEVGKGGVVRDPSLHARVCDDVRGWLEGESWHVKGIVESPITGPEGNVEFLI
AARRMGE

Sequences:

>Translated_247_residues
MPNKQRIDQLLVARGLAESRTRAQALVMAGIVFSGETKIAKPGQQLPEDAPVEVRGRDHPWVSRGGLKLAHALEHFELDP
AGVTAMDVGSSTGGFTDVLLKNGAAHVIAVDSGTNQLAWKLRQDERVSVMEQTSARILTREMIPQPYSWVVCDASFIGLA
KVLEVPLALAETQCQLVALIKPQFEVGRDEVGKGGVVRDPSLHARVCDDVRGWLEGESWHVKGIVESPITGPEGNVEFLI
AARRMGE
>Mature_246_residues
PNKQRIDQLLVARGLAESRTRAQALVMAGIVFSGETKIAKPGQQLPEDAPVEVRGRDHPWVSRGGLKLAHALEHFELDPA
GVTAMDVGSSTGGFTDVLLKNGAAHVIAVDSGTNQLAWKLRQDERVSVMEQTSARILTREMIPQPYSWVVCDASFIGLAK
VLEVPLALAETQCQLVALIKPQFEVGRDEVGKGGVVRDPSLHARVCDDVRGWLEGESWHVKGIVESPITGPEGNVEFLIA
ARRMGE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26800; Mature: 26669

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNKQRIDQLLVARGLAESRTRAQALVMAGIVFSGETKIAKPGQQLPEDAPVEVRGRDHP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCEEECCCCCC
WVSRGGLKLAHALEHFELDPAGVTAMDVGSSTGGFTDVLLKNGAAHVIAVDSGTNQLAWK
CCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCCEEEEE
LRQDERVSVMEQTSARILTREMIPQPYSWVVCDASFIGLAKVLEVPLALAETQCQLVALI
ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEE
KPQFEVGRDEVGKGGVVRDPSLHARVCDDVRGWLEGESWHVKGIVESPITGPEGNVEFLI
CCCHHCCCHHCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEE
AARRMGE
EECCCCC
>Mature Secondary Structure 
PNKQRIDQLLVARGLAESRTRAQALVMAGIVFSGETKIAKPGQQLPEDAPVEVRGRDHP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHCCCCCCEEECCCCCC
WVSRGGLKLAHALEHFELDPAGVTAMDVGSSTGGFTDVLLKNGAAHVIAVDSGTNQLAWK
CCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCCEEEEE
LRQDERVSVMEQTSARILTREMIPQPYSWVVCDASFIGLAKVLEVPLALAETQCQLVALI
ECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEE
KPQFEVGRDEVGKGGVVRDPSLHARVCDDVRGWLEGESWHVKGIVESPITGPEGNVEFLI
CCCHHCCCHHCCCCCEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEE
AARRMGE
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]