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The map label for this gene is ybbI [C]

Identifier: 85373720

GI number: 85373720

Start: 924587

End: 924982

Strand: Direct

Name: ybbI [C]

Synonym: ELI_04465

Alternate gene names: 85373720

Gene position: 924587-924982 (Clockwise)

Preceding gene: 85373717

Following gene: 85373722

Centisome position: 30.29

GC content: 59.85

Gene sequence:

>396_bases
ATGCAGATAGGAAAAATTGCCCGCGCGACCGGGACCAAAGTCAACACCGTTCGCTATTATGAAGAGATCGGTCTTCTGAA
GCCCGCTCCGCGCTCCCAGTCGGGACGAAGGATTTACGCAGACGCCGATGTCGAACGGCTCGCATTCATCCGGCGGGCTC
GGGGTTTGGGCTTTTCGGTGTCCGAAGTTCGCTCGCTGCTCGAAGTGTCGGACGCACCAAACCGGGATTGCAAGGACGCT
GCGACTTTGGCACGAAATCATTTGCGCCGGGTGGAAGAGCAGATCGAACAGCTGCAGGCGATGAGACAGGAACTGATCGG
CCTGGCACGGGCCTGCGATGGGGGCACTGCCACCGACTGCGGCATCATCGGCGGGCTTGCTAGAAAATCCGCCTGA

Upstream 100 bases:

>100_bases
AAGGACTTTCTGCGCACCTTTCGCAGAAAGTCTGACGGCCGATGTGCGATTGCGTCGCGGAGACACACACCCTGCGATGG
CCATCATCGAGGATTAAAGA

Downstream 100 bases:

>100_bases
AGATTGCCTTGGCAAAAGCGCAGAATCTACACTTTCGGCGCGGTGCCATCGTCGCGCTGCGTTTCTCCGGACCACCAGGT
AACGAGAAACAATGCCACTC

Product: transcriptional regulator, MerR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MQIGKIARATGTKVNTVRYYEEIGLLKPAPRSQSGRRIYADADVERLAFIRRARGLGFSVSEVRSLLEVSDAPNRDCKDA
ATLARNHLRRVEEQIEQLQAMRQELIGLARACDGGTATDCGIIGGLARKSA

Sequences:

>Translated_131_residues
MQIGKIARATGTKVNTVRYYEEIGLLKPAPRSQSGRRIYADADVERLAFIRRARGLGFSVSEVRSLLEVSDAPNRDCKDA
ATLARNHLRRVEEQIEQLQAMRQELIGLARACDGGTATDCGIIGGLARKSA
>Mature_131_residues
MQIGKIARATGTKVNTVRYYEEIGLLKPAPRSQSGRRIYADADVERLAFIRRARGLGFSVSEVRSLLEVSDAPNRDCKDA
ATLARNHLRRVEEQIEQLQAMRQELIGLARACDGGTATDCGIIGGLARKSA

Specific function: Could be a copper-dependent transcriptional activator of the ATPase HI_0290 [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=127, Percent_Identity=36.2204724409449, Blast_Score=96, Evalue=7e-22,
Organism=Escherichia coli, GI1789687, Length=127, Percent_Identity=34.6456692913386, Blast_Score=86, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 14357; Mature: 14357

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIGKIARATGTKVNTVRYYEEIGLLKPAPRSQSGRRIYADADVERLAFIRRARGLGFSV
CCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCH
SEVRSLLEVSDAPNRDCKDAATLARNHLRRVEEQIEQLQAMRQELIGLARACDGGTATDC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
GIIGGLARKSA
HHHHHHHHCCC
>Mature Secondary Structure
MQIGKIARATGTKVNTVRYYEEIGLLKPAPRSQSGRRIYADADVERLAFIRRARGLGFSV
CCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCH
SEVRSLLEVSDAPNRDCKDAATLARNHLRRVEEQIEQLQAMRQELIGLARACDGGTATDC
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
GIIGGLARKSA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]