Click here to switch to the map view.

The map label for this gene is traU [H]

Identifier: 85373689

GI number: 85373689

Start: 893911

End: 894924

Strand: Reverse

Name: traU [H]

Synonym: ELI_04310

Alternate gene names: 85373689

Gene position: 894924-893911 (Counterclockwise)

Preceding gene: 85373690

Following gene: 85373688

Centisome position: 29.32

GC content: 63.91

Gene sequence:

>1014_bases
ATGACCGGAATCCGCGCCTTCCTCGTGCTTTTCACGGCGATGCTGTCGCTGGTCTTCGCATCACCCGCTTCGGCCGATGC
CGGTCCGGGCAAGTGCACCGGGCAATTCGTCAATCCGATCACCGACATCTGCTGGTCGTGCCTGTTCCCGATCTCGATCG
GCGGGCTCGAAATCTGGCCGAGCAATCGTCCCGATCCGGACAACCCCGATTTCCCGCTGTGCCTGTGCGGTCTTCGGCCC
GGCATCGCGATGGGGTTCTGGGAGCCGGTCCGGCTCGCCGATGTCAGCATGAAGCCTTGGTGCTTCGTGAACCTCGGCGG
CATGAAGCTCGATCCCGGCTTTGATGTCGGCTTCCGCTCGATCTCGGGTCCTTCGGCCGTGGGCGGCGCCAGCCAGTATT
ATTCGAGCTGGCACGTCCACTGGTATGCCTATCCGCTGATCTACTGGATGGAGATCGTCGCCGATTTTCTGTGCCTCGAG
CCGGGTTCGATCGACATCCTCTACATCTCCGAGATCGATCCGCTGTGGCAGGACAGCGAGCTCACCGCGATCATCAATCC
CGAGGCCGTGCTGTTTGCCAACCCGCTGGCGCTTGCCGCGTGCGCGGCGGATTGTGCTGCAGCGACCGCGAACCTGCCGC
TCGACGAGATGTTCTGGTGCGCGGGCTGCCAAGGGTCGATGTACCCGATGAACGGCAACGTCTCGGCCTCGATCGGACAC
GTCCAGGCCTCGCGGCTCGTGCTCTCGCGCTTCGCCTACAAGCTCCACCGCGAGCTCGTCTCATGGGGGACGATGGGGTC
GAAGGGCCTGTGCGGCAAGTACCTGATGCCGGTGATGAGGAAGCAGCAATACCGCTTCCAGGCCACCAGCCCCAACCCGG
CGACCAAGGGCCGCTACGCCTGCCCGCCCATCGGTGCATCCACCACCTTCCAGTCCCCCGGACAGGTCATCCCCGCGATC
GGCGAAGACATGGGATACCTCGTCTGGCGCAAGAGGAATTGCTGCGCGCTATGA

Upstream 100 bases:

>100_bases
CGCAAAAATTCGGTATCAAGGCTGTTCCCGCGCGGGTGCGCCAGAACGGGCGCTTCCTCGAAGTCAGCGAGATTGCGCTG
CCGCGCCGGAAGGCACAGCC

Downstream 100 bases:

>100_bases
GAAACGCTTTCCCCATACTCGTTGGCCTGAGCCTCGTGATCGCTGCCGGATTTGCCGCCGCTTCTGCGCAGGATGCCGGA
CCCGACCTTGACCTCGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTGIRAFLVLFTAMLSLVFASPASADAGPGKCTGQFVNPITDICWSCLFPISIGGLEIWPSNRPDPDNPDFPLCLCGLRP
GIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDVGFRSISGPSAVGGASQYYSSWHVHWYAYPLIYWMEIVADFLCLE
PGSIDILYISEIDPLWQDSELTAIINPEAVLFANPLALAACAADCAAATANLPLDEMFWCAGCQGSMYPMNGNVSASIGH
VQASRLVLSRFAYKLHRELVSWGTMGSKGLCGKYLMPVMRKQQYRFQATSPNPATKGRYACPPIGASTTFQSPGQVIPAI
GEDMGYLVWRKRNCCAL

Sequences:

>Translated_337_residues
MTGIRAFLVLFTAMLSLVFASPASADAGPGKCTGQFVNPITDICWSCLFPISIGGLEIWPSNRPDPDNPDFPLCLCGLRP
GIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDVGFRSISGPSAVGGASQYYSSWHVHWYAYPLIYWMEIVADFLCLE
PGSIDILYISEIDPLWQDSELTAIINPEAVLFANPLALAACAADCAAATANLPLDEMFWCAGCQGSMYPMNGNVSASIGH
VQASRLVLSRFAYKLHRELVSWGTMGSKGLCGKYLMPVMRKQQYRFQATSPNPATKGRYACPPIGASTTFQSPGQVIPAI
GEDMGYLVWRKRNCCAL
>Mature_336_residues
TGIRAFLVLFTAMLSLVFASPASADAGPGKCTGQFVNPITDICWSCLFPISIGGLEIWPSNRPDPDNPDFPLCLCGLRPG
IAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDVGFRSISGPSAVGGASQYYSSWHVHWYAYPLIYWMEIVADFLCLEP
GSIDILYISEIDPLWQDSELTAIINPEAVLFANPLALAACAADCAAATANLPLDEMFWCAGCQGSMYPMNGNVSASIGHV
QASRLVLSRFAYKLHRELVSWGTMGSKGLCGKYLMPVMRKQQYRFQATSPNPATKGRYACPPIGASTTFQSPGQVIPAIG
EDMGYLVWRKRNCCAL

Specific function: Appears to be more essential to conjugal DNA transfer than to assembly of pilus filaments. Required for F plasmid conjugative transfer [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009649 [H]

Pfam domain/function: PF06834 TraU [H]

EC number: NA

Molecular weight: Translated: 36698; Mature: 36567

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGIRAFLVLFTAMLSLVFASPASADAGPGKCTGQFVNPITDICWSCLFPISIGGLEIWP
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
SNRPDPDNPDFPLCLCGLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDVGFRS
CCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEECCEEECCCCCCCCCC
ISGPSAVGGASQYYSSWHVHWYAYPLIYWMEIVADFLCLEPGSIDILYISEIDPLWQDSE
CCCCCCCCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
LTAIINPEAVLFANPLALAACAADCAAATANLPLDEMFWCAGCQGSMYPMNGNVSASIGH
EEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCEEECCCCCEEEECH
VQASRLVLSRFAYKLHRELVSWGTMGSKGLCGKYLMPVMRKQQYRFQATSPNPATKGRYA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCC
CPPIGASTTFQSPGQVIPAIGEDMGYLVWRKRNCCAL
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
TGIRAFLVLFTAMLSLVFASPASADAGPGKCTGQFVNPITDICWSCLFPISIGGLEIWP
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC
SNRPDPDNPDFPLCLCGLRPGIAMGFWEPVRLADVSMKPWCFVNLGGMKLDPGFDVGFRS
CCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCEEEEEECCEEECCCCCCCCCC
ISGPSAVGGASQYYSSWHVHWYAYPLIYWMEIVADFLCLEPGSIDILYISEIDPLWQDSE
CCCCCCCCCHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
LTAIINPEAVLFANPLALAACAADCAAATANLPLDEMFWCAGCQGSMYPMNGNVSASIGH
EEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCCEEECCCCCEEEECH
VQASRLVLSRFAYKLHRELVSWGTMGSKGLCGKYLMPVMRKQQYRFQATSPNPATKGRYA
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCC
CPPIGASTTFQSPGQVIPAIGEDMGYLVWRKRNCCAL
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2198250; 7915817; 2050638; 1355084 [H]