Click here to switch to the map view.

The map label for this gene is traF [H]

Identifier: 85373686

GI number: 85373686

Start: 890632

End: 891444

Strand: Reverse

Name: traF [H]

Synonym: ELI_04295

Alternate gene names: 85373686

Gene position: 891444-890632 (Counterclockwise)

Preceding gene: 85373687

Following gene: 85373685

Centisome position: 29.2

GC content: 64.58

Gene sequence:

>813_bases
ATGACCCATCTGCATCACCTCACGGCGCTCGCGCTCGGCATCGCTGCCCTGCCCGCCACTCTGGCCCAGGCGCAGGAGCG
GCGGGACACAAGATCGACCACCTCGGCAGACGCGCTCTACTGCGAAGAGCGCAGGCTCGGCTACTGGTTCTACTGCGTGA
AGCCCGCTCCCATTGAAGAGCCACAACAGCCTGAAGCCGAGCAGGTCGCGGCCAGCCAAGAACTCGACGCGATCACCTCC
GAGCTTCGCGAACTCAAGGCGCGCGCGATCCTCTATCCGACCGAGGCCAATGTCGCGGCCTATATCCGCTTCCAGCGCGC
GCAGCTCGACCGCGCCTCGCTGTTCTCCGATGTCTGGCAGCGGGCGATCTGGCAGGACCCGGACCTCGACTACACGCTTG
AACGCCCCGTCGGAGCGGTCGCCAAGAAGCAGTGGCAGGATGCCCGCAGCGCGGAGCGCGATCACGTCATGGCAACGCTC
TCGCAGCGCTACGGCCTTTTCTATTTCTTCAGTTCGACCTGCGGACCGTGCGAAGTGATGAGCCCGATCGTGAAGGGCGT
CGCCGACCGATGGCGGATCACCGTGCGCGCGATCTCCACCGATGGCGGTTCATCCCGGCATTTTCCCGACTATCGGGTCG
AGACGAACCAGCGCGGCAAGCTTGGTCTCGAAGGCAAAGCCACCCCCGCTCTGGTGCTGTGGGACAGCGTGACCAAACGC
CCGATTCCGATCGGCTACGGCGTGCTCTCGGCCGACGAGCTGCAGGACCGCATCTACCTTCTCACCTCCAAGGAAGCCGG
ACATGATTACTAG

Upstream 100 bases:

>100_bases
TCTATGCCGAGTTCACAGATGCCGCACGGCTGCCCGACGAACTCGAGACCAGCATCCTCATCCAGCAGAAAATCGAAGAT
TATTACGCAAGGGGCGGCCA

Downstream 100 bases:

>100_bases
CATCCGCAATGCGGCATTGACCCTCGCCACCGCCAGCATGGTTGCCTCACCGGTCGCCGCGAATGTTGGCGACAGCATGG
ACCGCTTCATAGACGACATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MTHLHHLTALALGIAALPATLAQAQERRDTRSTTSADALYCEERRLGYWFYCVKPAPIEEPQQPEAEQVAASQELDAITS
ELRELKARAILYPTEANVAAYIRFQRAQLDRASLFSDVWQRAIWQDPDLDYTLERPVGAVAKKQWQDARSAERDHVMATL
SQRYGLFYFFSSTCGPCEVMSPIVKGVADRWRITVRAISTDGGSSRHFPDYRVETNQRGKLGLEGKATPALVLWDSVTKR
PIPIGYGVLSADELQDRIYLLTSKEAGHDY

Sequences:

>Translated_270_residues
MTHLHHLTALALGIAALPATLAQAQERRDTRSTTSADALYCEERRLGYWFYCVKPAPIEEPQQPEAEQVAASQELDAITS
ELRELKARAILYPTEANVAAYIRFQRAQLDRASLFSDVWQRAIWQDPDLDYTLERPVGAVAKKQWQDARSAERDHVMATL
SQRYGLFYFFSSTCGPCEVMSPIVKGVADRWRITVRAISTDGGSSRHFPDYRVETNQRGKLGLEGKATPALVLWDSVTKR
PIPIGYGVLSADELQDRIYLLTSKEAGHDY
>Mature_269_residues
THLHHLTALALGIAALPATLAQAQERRDTRSTTSADALYCEERRLGYWFYCVKPAPIEEPQQPEAEQVAASQELDAITSE
LRELKARAILYPTEANVAAYIRFQRAQLDRASLFSDVWQRAIWQDPDLDYTLERPVGAVAKKQWQDARSAERDHVMATLS
QRYGLFYFFSSTCGPCEVMSPIVKGVADRWRITVRAISTDGGSSRHFPDYRVETNQRGKLGLEGKATPALVLWDSVTKRP
IPIGYGVLSADELQDRIYLLTSKEAGHDY

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30420; Mature: 30288

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHLHHLTALALGIAALPATLAQAQERRDTRSTTSADALYCEERRLGYWFYCVKPAPIEE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCEEEEEEECCCCCCC
PQQPEAEQVAASQELDAITSELRELKARAILYPTEANVAAYIRFQRAQLDRASLFSDVWQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHH
RAIWQDPDLDYTLERPVGAVAKKQWQDARSAERDHVMATLSQRYGLFYFFSSTCGPCEVM
HHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
SPIVKGVADRWRITVRAISTDGGSSRHFPDYRVETNQRGKLGLEGKATPALVLWDSVTKR
HHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCC
PIPIGYGVLSADELQDRIYLLTSKEAGHDY
CCCCCCCCCCHHHHCCEEEEEEECCCCCCC
>Mature Secondary Structure 
THLHHLTALALGIAALPATLAQAQERRDTRSTTSADALYCEERRLGYWFYCVKPAPIEE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCEEEEEEECCCCCCC
PQQPEAEQVAASQELDAITSELRELKARAILYPTEANVAAYIRFQRAQLDRASLFSDVWQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHH
RAIWQDPDLDYTLERPVGAVAKKQWQDARSAERDHVMATLSQRYGLFYFFSSTCGPCEVM
HHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
SPIVKGVADRWRITVRAISTDGGSSRHFPDYRVETNQRGKLGLEGKATPALVLWDSVTKR
HHHHHHHHHHEEEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCC
PIPIGYGVLSADELQDRIYLLTSKEAGHDY
CCCCCCCCCCHHHHCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]