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The map label for this gene is traH [H]

Identifier: 85373685

GI number: 85373685

Start: 889206

End: 890642

Strand: Reverse

Name: traH [H]

Synonym: ELI_04290

Alternate gene names: 85373685

Gene position: 890642-889206 (Counterclockwise)

Preceding gene: 85373686

Following gene: 85373684

Centisome position: 29.18

GC content: 62.77

Gene sequence:

>1437_bases
ATGATTACTAGCATCCGCAATGCGGCATTGACCCTCGCCACCGCCAGCATGGTTGCCTCACCGGTCGCCGCGAATGTTGG
CGACAGCATGGACCGCTTCATAGACGACATGGGGGCGGCGGCGAATGTCACCGGCCCGACCGCCTTCGAAGGCCAGTCGG
CAGGCTATTACAGCCTCGGCAATGTCTGGACGCGCTTCCCTCAGAAGACGACCAACATCGCCAATCTCCAGCTGCCGCGC
GCAAGGGCGGGCTGCGGGGGCATCGATATCTTTGCCGGGTCCTTTTCGTTCATCAATGCGAGCGAGATGGTCGCGCTCCT
GAAAGCCGTCGCCAACAACGCGGTCGGCTTTGCTTTCAGCCTCGCGATCGACACCGTCTGTCCCGAGTGCAACAAGATCA
TGCAGGAGTTTTCGCAGAAGGCTCAACTCATGAACAATCTCTCGATCAACTCCTGCGAAATGGCGCAGGGGCTGGTCGGC
GGCCTGTGGCCCAAGGGCGATCTCGCCGACAAGGCGATCTGCGAAGCCATCGGGAATTCCGAAGGCATTTTCACCGACTA
TGCGGCCGCCAAACACGGCTGCGGCACGCGCGGCCAGCGCGCGTCAACCAACGAAGGCGGCGGCACCGACTACGCCGACG
TCAATCCGGGCGTCGCGCGCAACTACACCTGGCACGTCCTCAAGAAGAGCGCCTTCTTCAATCCCGGCGGTACCTTCGAC
CGCGAACTCGCCGAGTACGCCATGACGCTGATTGGCACGGTCATCTACGTGCCACCCAAGGATGATGAACCCGGCAAATT
CGTGCCGTTCGCGGGCGACGCGTCCTCGACGCTCGTAAGCGCGCTCCTAGACGGGACGCAGGGGCAGACCGTGCGCGTTT
TCCGCTGCGACGAGACCGATCTCTGCTTCAGTCCCACCTTCGAGCAGATGAGCCTATCGAATGCAAAGGCCATCCGCCCG
CGGGTCGCGCTCCTGATCGGGAACATGGTCGATGCGATCCGGGCCGACACCGCGATCGGCAATGCCGAAAAGGAACTGCT
GCAGGTGGCCTCTATCCCCTTATACAAGATCCTTACCGTCCAGGCTGCCTATGGGCGCGGAATGCCGACCGACGATCGCG
ACACGCTCGCCGAGATCGCCAGCATCGACCTGCTCTATGCCATCCTCGACCGGATCGTGTCCGAAGCCGGGCGTTCGATG
GCAAGCTTCATCGCCGCCGATGAAGCCAAGCTTGCGATCTGGCGCGGCCAGGTCGCCGAAGTGCGTTCTGGCCTGGTCCA
GAGGCAGGCTACCGGACAGGCCAAGGTCTCGGCGATCATGCAGATCATCGAGAAGACCGCGATGATCGAGAACGCCCTCG
CCGCTTCGATGTCGCCCTCGATGTCCGCAGCGCTCGACTGGTCGCGCGGGCTCCAGTCGCGCTCCATTATCCCCTGA

Upstream 100 bases:

>100_bases
GACAGCGTGACCAAACGCCCGATTCCGATCGGCTACGGCGTGCTCTCGGCCGACGAGCTGCAGGACCGCATCTACCTTCT
CACCTCCAAGGAAGCCGGAC

Downstream 100 bases:

>100_bases
GGCCGCTACATGGTCGAGATCTTCACAACCGGCGGCGGCGAATACATCGTCAATGTCTTGAACGCCGTCGCCTCGTGGAC
CGGGGCCGGTGGCTACAAGA

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MITSIRNAALTLATASMVASPVAANVGDSMDRFIDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQKTTNIANLQLPR
ARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVG
GLWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTRGQRASTNEGGGTDYADVNPGVARNYTWHVLKKSAFFNPGGTFD
RELAEYAMTLIGTVIYVPPKDDEPGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETDLCFSPTFEQMSLSNAKAIRP
RVALLIGNMVDAIRADTAIGNAEKELLQVASIPLYKILTVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSM
ASFIAADEAKLAIWRGQVAEVRSGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIIP

Sequences:

>Translated_478_residues
MITSIRNAALTLATASMVASPVAANVGDSMDRFIDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQKTTNIANLQLPR
ARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVG
GLWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTRGQRASTNEGGGTDYADVNPGVARNYTWHVLKKSAFFNPGGTFD
RELAEYAMTLIGTVIYVPPKDDEPGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETDLCFSPTFEQMSLSNAKAIRP
RVALLIGNMVDAIRADTAIGNAEKELLQVASIPLYKILTVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSM
ASFIAADEAKLAIWRGQVAEVRSGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIIP
>Mature_478_residues
MITSIRNAALTLATASMVASPVAANVGDSMDRFIDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQKTTNIANLQLPR
ARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVG
GLWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTRGQRASTNEGGGTDYADVNPGVARNYTWHVLKKSAFFNPGGTFD
RELAEYAMTLIGTVIYVPPKDDEPGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETDLCFSPTFEQMSLSNAKAIRP
RVALLIGNMVDAIRADTAIGNAEKELLQVASIPLYKILTVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSM
ASFIAADEAKLAIWRGQVAEVRSGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIIP

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 50726; Mature: 50726

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSIRNAALTLATASMVASPVAANVGDSMDRFIDDMGAAANVTGPTAFEGQSAGYYSLG
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHH
NVWTRFPQKTTNIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFS
HHHHHCCCHHCCCCCEECCCHHCCCCCEEEEECCCHHCCHHHHHHHHHHHHCCCCHHHHH
LAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNS
HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
EGIFTDYAAAKHGCGTRGQRASTNEGGGTDYADVNPGVARNYTWHVLKKSAFFNPGGTFD
CCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCHH
RELAEYAMTLIGTVIYVPPKDDEPGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETD
HHHHHHHHHHHCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC
LCFSPTFEQMSLSNAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASIPLYKILTV
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHEE
QAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQVAE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH
VRSGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIIP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MITSIRNAALTLATASMVASPVAANVGDSMDRFIDDMGAAANVTGPTAFEGQSAGYYSLG
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHH
NVWTRFPQKTTNIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFS
HHHHHCCCHHCCCCCEECCCHHCCCCCEEEEECCCHHCCHHHHHHHHHHHHCCCCHHHHH
LAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNS
HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
EGIFTDYAAAKHGCGTRGQRASTNEGGGTDYADVNPGVARNYTWHVLKKSAFFNPGGTFD
CCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCHH
RELAEYAMTLIGTVIYVPPKDDEPGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETD
HHHHHHHHHHHCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC
LCFSPTFEQMSLSNAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASIPLYKILTV
CCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHEE
QAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQVAE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHH
VRSGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIIP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]