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The map label for this gene is yjiR [C]

Identifier: 85373651

GI number: 85373651

Start: 850066

End: 850965

Strand: Direct

Name: yjiR [C]

Synonym: ELI_04120

Alternate gene names: 85373651

Gene position: 850066-850965 (Clockwise)

Preceding gene: 85373650

Following gene: 85373654

Centisome position: 27.85

GC content: 59.89

Gene sequence:

>900_bases
ATGGATCAGGTAGTCACGGCGGCTGGCGGCCAGAATGCGCTGCTCGCCGTATCGCGGGCGGTACTTGCTCCTGGTGCCAG
GGTCGCCTGCGGAGAGTTCGTCTACCCCGGCTTTCGCGCAATTGCTTTGCGTCTGGGGGTCGAACTGGTTCCCTTGCAGG
CCATGAATGCCGATACACTGGAGCTTGCCTGTCGGCAGAATGATATTGCGGCGCTCTATGTCGTTCCTACCAACGACAAT
CCCACGGCAACCACCATCCCGCTTTCGGAACGTCGGAGAATTGCTGAGGTCGCTCAGCGATACAAGCTGCAGATCATCGA
GGACGATGCCTATGGCCTTCTGCCAAAGAGTCCGCTGCAGGCGATTTCCAGCCTTGTTCCGCAGCAATCGTGGCACATCC
TCAGTACGTCCAAAATCATCTCACCTGCTCTGCGGATTGCCTTCATCAGCGCGCCCACCGTGGCAGATGCACTGCGGCTA
ACGGCGGAGGTGCATGACACCGCTGTGATGCCACCTCCGCTCAATGCGGCAATGGTCGCAATGTGGTTGCGCGAGGGGGC
CTTTGACAGCTTGGTGTCGGCAGTGCGGGGCGAAGCCGAATGGCGTTCGGATCTTGCTGCCAAGATCCTGAAGGATCATT
CAATCTGCCTCCAGCCTCAGGGTTACCATCTCTGGCTTTCGCTTCCAGCTGGAGCGTCGGCTTCCATGCTCTCTCAGCAG
CTTACTGCCGCGGGTGTCGGAGCGATTCCATCCGACAGGTTCGCGGTAGGCAAGGTCGCCGCGCAAGCGCTGAGGGTCTC
GCTTGGCGGCACGGCCCCACGAACAACCCTTGAGGCCGCTTTGAGACAACTCGCGGGCCATCTATCTCTACTCGACGTCG
AGCGGGCTGATATCATTTAG

Upstream 100 bases:

>100_bases
CTCTTGGCCAGAACGCGGGCTCATTGCTCCAATATCAATCCGCTGGCAATGATCAGGCAATCATCCGGGCTGGAACCGAC
CTTGCGGCGCGGGTCGGGCT

Downstream 100 bases:

>100_bases
GCCGCTTTCCCGGTGGCTCTTGTTCAAACCGGCAAGTCCGGAACCGGCCCAATTCCAGTCGTATAATTCGAAAGACCTCA
ATGGGCAGCTTCGGGGCCGG

Product: putative transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDQVVTAAGGQNALLAVSRAVLAPGARVACGEFVYPGFRAIALRLGVELVPLQAMNADTLELACRQNDIAALYVVPTNDN
PTATTIPLSERRRIAEVAQRYKLQIIEDDAYGLLPKSPLQAISSLVPQQSWHILSTSKIISPALRIAFISAPTVADALRL
TAEVHDTAVMPPPLNAAMVAMWLREGAFDSLVSAVRGEAEWRSDLAAKILKDHSICLQPQGYHLWLSLPAGASASMLSQQ
LTAAGVGAIPSDRFAVGKVAAQALRVSLGGTAPRTTLEAALRQLAGHLSLLDVERADII

Sequences:

>Translated_299_residues
MDQVVTAAGGQNALLAVSRAVLAPGARVACGEFVYPGFRAIALRLGVELVPLQAMNADTLELACRQNDIAALYVVPTNDN
PTATTIPLSERRRIAEVAQRYKLQIIEDDAYGLLPKSPLQAISSLVPQQSWHILSTSKIISPALRIAFISAPTVADALRL
TAEVHDTAVMPPPLNAAMVAMWLREGAFDSLVSAVRGEAEWRSDLAAKILKDHSICLQPQGYHLWLSLPAGASASMLSQQ
LTAAGVGAIPSDRFAVGKVAAQALRVSLGGTAPRTTLEAALRQLAGHLSLLDVERADII
>Mature_299_residues
MDQVVTAAGGQNALLAVSRAVLAPGARVACGEFVYPGFRAIALRLGVELVPLQAMNADTLELACRQNDIAALYVVPTNDN
PTATTIPLSERRRIAEVAQRYKLQIIEDDAYGLLPKSPLQAISSLVPQQSWHILSTSKIISPALRIAFISAPTVADALRL
TAEVHDTAVMPPPLNAAMVAMWLREGAFDSLVSAVRGEAEWRSDLAAKILKDHSICLQPQGYHLWLSLPAGASASMLSQQ
LTAAGVGAIPSDRFAVGKVAAQALRVSLGGTAPRTTLEAALRQLAGHLSLLDVERADII

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=313, Percent_Identity=23.961661341853, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI33469970, Length=313, Percent_Identity=23.961661341853, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1790797, Length=303, Percent_Identity=25.0825082508251, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787710, Length=288, Percent_Identity=23.6111111111111, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6321000, Length=194, Percent_Identity=27.319587628866, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 31734; Mature: 31734

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQVVTAAGGQNALLAVSRAVLAPGARVACGEFVYPGFRAIALRLGVELVPLQAMNADTL
CCCEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCEEEEEECCCCCHH
ELACRQNDIAALYVVPTNDNPTATTIPLSERRRIAEVAQRYKLQIIEDDAYGLLPKSPLQ
HEEECCCCEEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHH
AISSLVPQQSWHILSTSKIISPALRIAFISAPTVADALRLTAEVHDTAVMPPPLNAAMVA
HHHHHCCCCCCEEEHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
MWLREGAFDSLVSAVRGEAEWRSDLAAKILKDHSICLQPQGYHLWLSLPAGASASMLSQQ
HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCHHHHHHH
LTAAGVGAIPSDRFAVGKVAAQALRVSLGGTAPRTTLEAALRQLAGHLSLLDVERADII
HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEECHHHCCC
>Mature Secondary Structure
MDQVVTAAGGQNALLAVSRAVLAPGARVACGEFVYPGFRAIALRLGVELVPLQAMNADTL
CCCEEECCCCCCHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHCCEEEEEECCCCCHH
ELACRQNDIAALYVVPTNDNPTATTIPLSERRRIAEVAQRYKLQIIEDDAYGLLPKSPLQ
HEEECCCCEEEEEEEECCCCCCEEECCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHH
AISSLVPQQSWHILSTSKIISPALRIAFISAPTVADALRLTAEVHDTAVMPPPLNAAMVA
HHHHHCCCCCCEEEHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
MWLREGAFDSLVSAVRGEAEWRSDLAAKILKDHSICLQPQGYHLWLSLPAGASASMLSQQ
HHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCHHHHHHH
LTAAGVGAIPSDRFAVGKVAAQALRVSLGGTAPRTTLEAALRQLAGHLSLLDVERADII
HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]