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The map label for this gene is yciR [C]

Identifier: 85373611

GI number: 85373611

Start: 808416

End: 810074

Strand: Reverse

Name: yciR [C]

Synonym: ELI_03920

Alternate gene names: 85373611

Gene position: 810074-808416 (Counterclockwise)

Preceding gene: 85373613

Following gene: 85373610

Centisome position: 26.54

GC content: 61.48

Gene sequence:

>1659_bases
ATGGGGACCCACACGAGCAAGGTCGCTGACGGCCTCGCCAATGCGCGACGCGACGTCGTCGCACTCGGCATTGCAGCAGC
TGCGATCATCATGTTCATCGGCACCGGCAGCGCCGTTTTGCCGCAGATCGTCGAACAATGGAGCAGCGGCGGCGCGGACG
GCCCCAGCAGCGTTCTCAGCAGCGCCCTGATCCTCAACATCGCCCTGATCATCTTCGGCTGGCGCCGCTACCGCGAACTC
ACGGTGGAAATCGACACCCGCCGCGCCGCCGAGGCCAAGGCGCGCGAGCTCGCGGAAATCGATCCGCTCACCGGCTGCAA
CAACCGCCGCAGCGCGACCATCGAAACCGATCGTGCGATCGACAAGGCGCACAAGGAAGGCCGCGCAATCGCCTTCATCA
TGGTCGATCTCGACAATTTCAAGCAGGTCAACGACCTCAACGGTCACCAGGCTGGGGACGATGTGCTGGTCCGCGCAGCC
GACCGGATGTCGTCACTGCTGCCGCGCGACGGATTGCTGGCGCGGCTCGGCGGGGATGAGTTCGCGATCGTGCATCCCTA
CGACAAGACTTCCCCCGATCTGGTCGAACAATTCGTCTCGCGCCTGATCGACAGCCTGGCCAAACCGATGGCGGTCCAGT
CGCAAAAGGTCGATGTCACCGTTTCGGTCGGCATCGCTTCGGGGATGTCGGGCCGCCATGGCGAGCAGAACGAGACCGAC
GCGCAGGTGCTGATGCACCAGGCCGACATCGCGATGTATCATGCCAAGCGGCAGGGCAAGAACCGCTATTACTGGTTCGA
AGAAACCATGGAAAACGAGCTGCGCTTCCGCAACCAGCTCGAGCGCGGCATACGCATCGGCGTCGAAAAGGGTGAGTTCG
TTCCCCATTACGAACAGCAGGTCGATATTGCCACCGGTCGCCTGATGGGTTTCGAAATGCTCGCACGCTGGAATTCGCCC
AAGCTCGGCATGATCAGCCCCGAGATTTTCATTCCGATCGCCGAGGATATCGGCGTCATCGCGGAGCTTTCCGAAGGCCT
CATGCGCCAGGCCTTCCGGGACGCGAAGGAATGGGATCCATCGCTGACGATCTCCGTCAATATCTCGCCGGTACAGCTGC
GCGATCCGTGGTTCTCGCAGAAGATCCTCAAACTGCTGCAGGAATGCAATTTTCCCGCCCAGCGGCTGGATATCGAGATC
ACGGAAAGCTGCCTGCACGACAATGTCGGGGTGGTGCGCTCGATGATCACCAGCCTCAAGAACCAGGGCGTAAAGATCAG
CCTCGACGATTTCGGCACCGGCTATTCGAGCCTGTCGCAATTGCGATCGCTGCCGTTCGACCGGATCAAGATCGATCGCA
GTTTCGTCAGCGAGCTGAAAGACGAGGACGCCAATTCCAAGATCGTTTCGGCGATCATCTCGCTTGGTGCCGGGCTCGAA
ATGCCGATCACGGCGGAAGGGATCGAGGACGCGACCATTCTGGAAACGCTGCAGCAGATGGGCGAGATGAAGGGCCAGGG
CTATCTCTACGGGCGCCCGGAATCGGCGTCCGACGTGCGCAAGCGCCTCGAAAAGGAAGGCTTGCTGGTCGGCATCGAAG
ACAAGCCCGGTACCGATCCGGCCTCCGACGAGGACGAGCCGCTGCAAAAGTCGGCCTGA

Upstream 100 bases:

>100_bases
GTAAGCGCGAAGTTAAGGCTCATTTTACGCAATTTTCAGGGGGGATGGGCATAGACAAAGGCAATTCGGCTCGATTTTCG
GGCATTTGAGGATGGGGATA

Downstream 100 bases:

>100_bases
TCGCGGACGAATCGGCGGCGCGCGCTCTTTACGCGCGCTCCCGCGACCCATAGATGCGCGGAAGATGCGCGTCTCCTTCA
CCAAGATGCACGGCCTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 551

Protein sequence:

>552_residues
MGTHTSKVADGLANARRDVVALGIAAAAIIMFIGTGSAVLPQIVEQWSSGGADGPSSVLSSALILNIALIIFGWRRYREL
TVEIDTRRAAEAKARELAEIDPLTGCNNRRSATIETDRAIDKAHKEGRAIAFIMVDLDNFKQVNDLNGHQAGDDVLVRAA
DRMSSLLPRDGLLARLGGDEFAIVHPYDKTSPDLVEQFVSRLIDSLAKPMAVQSQKVDVTVSVGIASGMSGRHGEQNETD
AQVLMHQADIAMYHAKRQGKNRYYWFEETMENELRFRNQLERGIRIGVEKGEFVPHYEQQVDIATGRLMGFEMLARWNSP
KLGMISPEIFIPIAEDIGVIAELSEGLMRQAFRDAKEWDPSLTISVNISPVQLRDPWFSQKILKLLQECNFPAQRLDIEI
TESCLHDNVGVVRSMITSLKNQGVKISLDDFGTGYSSLSQLRSLPFDRIKIDRSFVSELKDEDANSKIVSAIISLGAGLE
MPITAEGIEDATILETLQQMGEMKGQGYLYGRPESASDVRKRLEKEGLLVGIEDKPGTDPASDEDEPLQKSA

Sequences:

>Translated_552_residues
MGTHTSKVADGLANARRDVVALGIAAAAIIMFIGTGSAVLPQIVEQWSSGGADGPSSVLSSALILNIALIIFGWRRYREL
TVEIDTRRAAEAKARELAEIDPLTGCNNRRSATIETDRAIDKAHKEGRAIAFIMVDLDNFKQVNDLNGHQAGDDVLVRAA
DRMSSLLPRDGLLARLGGDEFAIVHPYDKTSPDLVEQFVSRLIDSLAKPMAVQSQKVDVTVSVGIASGMSGRHGEQNETD
AQVLMHQADIAMYHAKRQGKNRYYWFEETMENELRFRNQLERGIRIGVEKGEFVPHYEQQVDIATGRLMGFEMLARWNSP
KLGMISPEIFIPIAEDIGVIAELSEGLMRQAFRDAKEWDPSLTISVNISPVQLRDPWFSQKILKLLQECNFPAQRLDIEI
TESCLHDNVGVVRSMITSLKNQGVKISLDDFGTGYSSLSQLRSLPFDRIKIDRSFVSELKDEDANSKIVSAIISLGAGLE
MPITAEGIEDATILETLQQMGEMKGQGYLYGRPESASDVRKRLEKEGLLVGIEDKPGTDPASDEDEPLQKSA
>Mature_551_residues
GTHTSKVADGLANARRDVVALGIAAAAIIMFIGTGSAVLPQIVEQWSSGGADGPSSVLSSALILNIALIIFGWRRYRELT
VEIDTRRAAEAKARELAEIDPLTGCNNRRSATIETDRAIDKAHKEGRAIAFIMVDLDNFKQVNDLNGHQAGDDVLVRAAD
RMSSLLPRDGLLARLGGDEFAIVHPYDKTSPDLVEQFVSRLIDSLAKPMAVQSQKVDVTVSVGIASGMSGRHGEQNETDA
QVLMHQADIAMYHAKRQGKNRYYWFEETMENELRFRNQLERGIRIGVEKGEFVPHYEQQVDIATGRLMGFEMLARWNSPK
LGMISPEIFIPIAEDIGVIAELSEGLMRQAFRDAKEWDPSLTISVNISPVQLRDPWFSQKILKLLQECNFPAQRLDIEIT
ESCLHDNVGVVRSMITSLKNQGVKISLDDFGTGYSSLSQLRSLPFDRIKIDRSFVSELKDEDANSKIVSAIISLGAGLEM
PITAEGIEDATILETLQQMGEMKGQGYLYGRPESASDVRKRLEKEGLLVGIEDKPGTDPASDEDEPLQKSA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=437, Percent_Identity=35.0114416475973, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=29.3023255813954, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1787055, Length=263, Percent_Identity=35.361216730038, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=35.0806451612903, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI87081980, Length=261, Percent_Identity=32.5670498084291, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI226510982, Length=394, Percent_Identity=25.3807106598985, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=32.0987654320988, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=33.6, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=32.3404255319149, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=28.5714285714286, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788849, Length=216, Percent_Identity=29.1666666666667, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=28.9795918367347, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786584, Length=200, Percent_Identity=26.5, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789650, Length=426, Percent_Identity=20.6572769953052, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787802, Length=142, Percent_Identity=31.6901408450704, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=409, Percent_Identity=23.960880195599, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081881, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=33.7209302325581, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=223, Percent_Identity=30.0448430493274, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=29.7752808988764, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787262, Length=232, Percent_Identity=25.4310344827586, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 60910; Mature: 60779

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTHTSKVADGLANARRDVVALGIAAAAIIMFIGTGSAVLPQIVEQWSSGGADGPSSVLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
SALILNIALIIFGWRRYRELTVEIDTRRAAEAKARELAEIDPLTGCNNRRSATIETDRAI
HHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHH
DKAHKEGRAIAFIMVDLDNFKQVNDLNGHQAGDDVLVRAADRMSSLLPRDGLLARLGGDE
HHHHHCCCEEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC
FAIVHPYDKTSPDLVEQFVSRLIDSLAKPMAVQSQKVDVTVSVGIASGMSGRHGEQNETD
EEEECCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEEEECCCCCCCCCCCCHH
AQVLMHQADIAMYHAKRQGKNRYYWFEETMENELRFRNQLERGIRIGVEKGEFVPHYEQQ
HHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHH
VDIATGRLMGFEMLARWNSPKLGMISPEIFIPIAEDIGVIAELSEGLMRQAFRDAKEWDP
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLTISVNISPVQLRDPWFSQKILKLLQECNFPAQRLDIEITESCLHDNVGVVRSMITSLK
CEEEEEEECEEEECCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCHHHHHHHHHHHH
NQGVKISLDDFGTGYSSLSQLRSLPFDRIKIDRSFVSELKDEDANSKIVSAIISLGAGLE
CCCEEEEECCCCCCHHHHHHHHHCCHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
MPITAEGIEDATILETLQQMGEMKGQGYLYGRPESASDVRKRLEKEGLLVGIEDKPGTDP
CCEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCC
ASDEDEPLQKSA
CCCCCCCCCCCC
>Mature Secondary Structure 
GTHTSKVADGLANARRDVVALGIAAAAIIMFIGTGSAVLPQIVEQWSSGGADGPSSVLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
SALILNIALIIFGWRRYRELTVEIDTRRAAEAKARELAEIDPLTGCNNRRSATIETDRAI
HHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHH
DKAHKEGRAIAFIMVDLDNFKQVNDLNGHQAGDDVLVRAADRMSSLLPRDGLLARLGGDE
HHHHHCCCEEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCC
FAIVHPYDKTSPDLVEQFVSRLIDSLAKPMAVQSQKVDVTVSVGIASGMSGRHGEQNETD
EEEECCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEEEEECCCCCCCCCCCCHH
AQVLMHQADIAMYHAKRQGKNRYYWFEETMENELRFRNQLERGIRIGVEKGEFVPHYEQQ
HHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHH
VDIATGRLMGFEMLARWNSPKLGMISPEIFIPIAEDIGVIAELSEGLMRQAFRDAKEWDP
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
SLTISVNISPVQLRDPWFSQKILKLLQECNFPAQRLDIEITESCLHDNVGVVRSMITSLK
CEEEEEEECEEEECCCHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCHHHHHHHHHHHH
NQGVKISLDDFGTGYSSLSQLRSLPFDRIKIDRSFVSELKDEDANSKIVSAIISLGAGLE
CCCEEEEECCCCCCHHHHHHHHHCCHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC
MPITAEGIEDATILETLQQMGEMKGQGYLYGRPESASDVRKRLEKEGLLVGIEDKPGTDP
CCEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCC
ASDEDEPLQKSA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]