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The map label for this gene is secD

Identifier: 85373546

GI number: 85373546

Start: 742568

End: 744166

Strand: Direct

Name: secD

Synonym: ELI_03595

Alternate gene names: 85373546

Gene position: 742568-744166 (Clockwise)

Preceding gene: 85373545

Following gene: 85373547

Centisome position: 24.33

GC content: 65.17

Gene sequence:

>1599_bases
ATGCTCGAATTTCCGCGCTGGAAGAAGATCTGGCTCTGGGCCATTACGCTGGCAGTGATGCTGGCGGCGGTGCCGTCGCT
GCTTTCCACCACTTCGATCCGCTGGCCCGACGCGCTGCCCAGCCCGACGGTCAATCTCGGCCTCGACCTGGCCGGTGGCA
GCCACATCCTGCTCGAAGCCGAAGCAAGCCAGGTCCGCGCCCAGCGGCTGGAGAACATGGAAGAGGCCGTGCGCAACGCC
ATGCGCAGTGCCGAGCCGCGCATCCGCATCGGCGATGTTTCGACCGCCGACGGGCAGCTGAGCTTCATGCTCGACGATAG
CGGCGATATCGACCGGGCGCGGGAACTGCTGACTCCGCTGATGAACGGGCAGGGCCTGACCCGCGAGTGGGAACTCACCT
TGGTCGATACCAGCCGCGTGGTCCTCTCTCCGACACAGGACGGGCTCGAACAGGCGGTGACCGACGCGATGGACAGCGCG
ACCGAAGTCGTGCGCAAGCGCATCGACGAACTCGGCACGCGCGAGCCGACCATCATTCGCCAGGGCGACACCCGCATCGT
GGTGCAGGTCCCCGGACTGCAGGACCCCGACCAGCTCAAGGAACTGCTCGGCCAGACCGCCAAACTCGAATTCAAGATGG
TCGACGAGACGGCGCTTCCGTCCGATGTCGAACAGGGAATCGCCCCGCCGGGCAGCCAGATTTTCCCTTATGCGGCCGGC
AGCGCGCAGGAAGGACTTTCCGTCGCCGTGCGCCGGCTCGGCGGCATTCGCGGCGACAGCCTGATCGGGGCGCAGCAGAG
CTTCGACCCGCAAACAAACGAGCCTGTCGTCACCATCCAGTTCGACCAGCAGGGCGGGCAGCGCTTCGCCCAGCTTTCCA
CCCAGAATGTCGGCAAGCTTTTCGCCATCATCCTCGACGGCGAAGTGCTTTCGACGCCGAGCTTCAACGAACCGATCCTC
GGCGGAAGCGCGCAGATTTCGGGCAGTTTCACCGTCGATAGCGCCAATGCGCTGGCGATTTCGCTGCGTTCGGGTGCGTT
GCCGGTCGATCTCGCGGTAGTGGAAGAACGCACCGTCGGGCCCGATCTCGGCGCGGATTCGATCCGCAGCGGCCTGTTGG
CCATGGCGATCGGCTCAATCGCGGTGATCGGACTGATGGTCGCAACCTATGGTCGCTTCGGCATCTACGCGACGGCGGCG
CTGGTCATCAACGTGATCATGATCCTCGGCATCATGGCGGTGATGAACACCACGCTGACGCTGCCGGGTATCGCCGGTTT
CGTGCTGACGGTGGGTGCGGCGGTCGATGCCAACGTGCTCATCAACGAACGCATACGCGAAGAGCGAAAACGCGGGCGGC
GGGTGATCGCCGCGGTCGAGAACGGCTACCGCGAGGCAAGCCGGGCGATTTACGATGCCAACGTGACCAACTTCATCGCC
GGCGTGCTGCTGTTCCTGTTCGGCTCCGGCCCGATCCGCGGCTTCGCGGTGGTCCTCATCATCGGCCTGTTCACCAGCGT
CTTTACCGCCGTCACCCTGACCCGCCTGTGGGTCGCCGGCTGGCTGCGCAAGGCGCGGCCGTCAGAGCTCTACGTGTAA

Upstream 100 bases:

>100_bases
TGCGCGTGAAGGCGGTCAAGAACACGATCGGCGACATCATCCCGCCGGGCGGCGAAGCCGCGAACGACTGATGCCGCTGT
AGGGACGGGACCTTAACCTC

Downstream 100 bases:

>100_bases
GGAGGCGGACGATGAAACTGCTGAAGCTCGTCCCCGACGATACCAATATCAAATTCCTCAAATGGCGCGTGCCGTTTTAT
GTCGTCAGCCTGCTGCTGAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MLEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIRWPDALPSPTVNLGLDLAGGSHILLEAEASQVRAQRLENMEEAVRNA
MRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPLMNGQGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSA
TEVVRKRIDELGTREPTIIRQGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIFPYAAG
SAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQNVGKLFAIILDGEVLSTPSFNEPIL
GGSAQISGSFTVDSANALAISLRSGALPVDLAVVEERTVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAA
LVINVIMILGIMAVMNTTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANVTNFIA
GVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSELYV

Sequences:

>Translated_532_residues
MLEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIRWPDALPSPTVNLGLDLAGGSHILLEAEASQVRAQRLENMEEAVRNA
MRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPLMNGQGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSA
TEVVRKRIDELGTREPTIIRQGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIFPYAAG
SAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQNVGKLFAIILDGEVLSTPSFNEPIL
GGSAQISGSFTVDSANALAISLRSGALPVDLAVVEERTVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAA
LVINVIMILGIMAVMNTTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANVTNFIA
GVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSELYV
>Mature_532_residues
MLEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIRWPDALPSPTVNLGLDLAGGSHILLEAEASQVRAQRLENMEEAVRNA
MRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPLMNGQGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSA
TEVVRKRIDELGTREPTIIRQGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIFPYAAG
SAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQNVGKLFAIILDGEVLSTPSFNEPIL
GGSAQISGSFTVDSANALAISLRSGALPVDLAVVEERTVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAA
LVINVIMILGIMAVMNTTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANVTNFIA
GVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSELYV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=516, Percent_Identity=35.2713178294574, Blast_Score=264, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57119; Mature: 57119

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIRWPDALPSPTVNLGLDLAGGSHILLEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEC
EASQVRAQRLENMEEAVRNAMRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
MNGQGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSATEVVRKRIDELGTREPTIIR
HCCCCCCEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
QGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIFPYAAG
CCCCEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCC
SAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQNVGKL
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
FAIILDGEVLSTPSFNEPILGGSAQISGSFTVDSANALAISLRSGALPVDLAVVEERTVG
EEEEECCCEECCCCCCCCCCCCCCEECCEEEECCCCEEEEEECCCCCCEEEEEECCCCCC
PDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAALVINVIMILGIMAVMNTTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANVTNFIA
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCHHHHHH
GVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSELYV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIRWPDALPSPTVNLGLDLAGGSHILLEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEC
EASQVRAQRLENMEEAVRNAMRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPL
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHH
MNGQGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSATEVVRKRIDELGTREPTIIR
HCCCCCCEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
QGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIFPYAAG
CCCCEEEEECCCCCCHHHHHHHHCCHHEEEEEEECCCCCCHHHHHCCCCCCCCCCCCCCC
SAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQNVGKL
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEE
FAIILDGEVLSTPSFNEPILGGSAQISGSFTVDSANALAISLRSGALPVDLAVVEERTVG
EEEEECCCEECCCCCCCCCCCCCCEECCEEEECCCCEEEEEECCCCCCEEEEEECCCCCC
PDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAALVINVIMILGIMAVMNTTLT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANVTNFIA
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHCCCHHHHHH
GVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSELYV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA