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The map label for this gene is bfrD [H]

Identifier: 85372904

GI number: 85372904

Start: 102762

End: 104855

Strand: Reverse

Name: bfrD [H]

Synonym: ELI_00385

Alternate gene names: 85372904

Gene position: 104855-102762 (Counterclockwise)

Preceding gene: 85372906

Following gene: 85372902

Centisome position: 3.44

GC content: 61.46

Gene sequence:

>2094_bases
ATGACCCGTTTTACCCACCGGATCGCCCTGCTCTCCACCGCAGCGCTACTCGGATATACTACCTCTGTCACAGCAGCCGA
AACCGCTGCTGAAGAAGGTCCCGAACGCGACTACCTCCCTGCCGAAATCGTCGTCACCGGCGCGGTCGGGGAATATGCGG
TCGAGGACGGCTCGACAGGTACGAAGACCCCGACCCCGCTGATCGATGTGCCACAGACCGTCACTTTCATCACCGACGAC
CAGCTCGAAGACCAGTCGATCCGCCAGCTCGGCGAGGCCCTGCGCTACGTTCCGGGCGTCAGCCTCGAGACCGGCGAAGG
CCATCGCGACGAGATTTTCATCCGCGGGCAGGAAACGACCGCCGACTTCTACCTCGACGGTCTGCGCGACGACGCGCAAT
ATTATCGTCCGCTCTACAATGTCGCGCGCGTCGAAGTGCTCAAGGGCGCCAATGCGCTGATCTTCGGCCGCGGCGGCGGC
GGCGGCGTGGTCAACCGCGTCAGCAAGACCGCCGATCTCGGCGAAGCATTCGGCGAATTCGATGCTTCGGCCGATACTTT
CGGTGCCTTCGCGCTGCTCGGCGACGTGAACGCGCCGCTGTCCGACAGCGCCGCGCTGCGCGTCAACGCAACCTACGAGG
AATTCGATAGCCACCGCGATTTCTACGAAGGCCGCTTCATCGGCATTTCGCCCACGCTGACCGCGCGGCTCGGCCCCGAT
ACCACGCTGACCGCGACCTATTCCTACGACGATGACAGCCGCGTCGTCGATCGCGGTATCCCCTCACTGGCGGGCGTGCC
GTTGATGGGGTTTGAGGATACCTTCTTCGGCGATCCCGACTTCAACCGCACCGATGCGGAAGTGCACATTTTGCGTAGCC
GAATCGAGCATGCCTTTTCGGACCAGCTGAGCGTGAACGCTTCGGTCCAATATGCAGATTACGACAAAATCTATCAGAAC
ATCGTCCCCGGCGGCACCGACGGCACGACCGTCTCGCTCAGCGGCTATCAGGATGCGCAAACCCGCGAGAACCTGATCGG
CCAAGCCAATCTTGTTTGGCAAGTCGAGACGGCGGGTGTCGAAAACACGTTCTTGTTCGGCGTTGAGGCGATGGACCAGC
AGTCCACAAACCAGCGCAGCAACGTCCAGTTCGCCGGCACCAATACTACGCCTTTGGCCGATGTCATAACCGTACCGGCC
TTCTCGCTCGGCCCGCTCGGCCGCGACCGCGATAGTTCGCTCAGCACGTTCTCGGCTTATGTCCAGGACCAGCTCAGCTT
CGGCATCGTCGAGATCGTCGCTGGGCTGCGCTACGAACGGTTCGACCTCGAAACCGTCGAACTCCTTACCGGCGTCCCCG
GCAGCCGGGTCGACGAAGAAGTCAGCCCGCGCGCGGCCATCATCCTCAAGCCGCAGGAAAACCTGTCCTTCTACGCTTCC
TATGCCGAAAGCTTCCTGCCGCAATCGGGCGACCAGTTCTTCCTGCTGACGCCGACGACCGAGGCCTTCGAACCGGAGAA
ATTCACCAATTACGAGATCGGCGCCAAGTGGTCGGTCAAGCCGGGCCTGCTCGCCACGGCATCGATTTTCCGGCTCGACC
GCGACAATACCCGCGCGACCGATCCGAACAATACCGGTCTCACCATCTTGACCGGCGCGAGCCGGACCGAAGGGTTCGAA
CTCAACGTGATCGGCGACATCACGCCCAATTGGCACACCAATATCGGCTACACCTATCTCGACGGCGAGATTACCAGCCA
GTCAACCTTCGGCGCTGCGGGCCAGCGGCTGCAGCAATTGCCCAAGCACCAGATCAGCGCGTGGAACCGGTTCGATGTGA
CCGAGGCCTTCGGGCTGGGTTTCGGCGTGATCTACCAGGACGAGCAGTTCGCGAGCTTCAGCAACAACGTGACGCTGCCC
GACTATTGGCGGTTCGATGCGGCGGCGTATTACACGGTGAACGATCGCATTTCACTTCAAGTCAATATCGAGAATCTGTT
CGACGAGACCTATTTCCCGAGCGCCCATGGCGACAACAATATCCAGCCGGCCGAGCCCTTCAGTGCGCGCTTCGGCGTGC
GGGTGAAAATCTGA

Upstream 100 bases:

>100_bases
CGACAATTTTTCCGCCAAGCCCGATTGCTGGTTGCAATTGCGACTTATTCTCAATAGCAGGCCTGCATCAATCGAGAATC
GTTCGCAAGAAAGTGACTAC

Downstream 100 bases:

>100_bases
CCGATGCGTGAGCCCCCGCCGTCGCGGGGGCTCACTCTTCGTCCGGCTCGGGCGGTGTCATCGCCGGCACCGCCTCGGCT
GCATCGGCGGGATCGATGCC

Product: putative TonB-dependent receptor

Products: NA

Alternate protein names: Virulence-associated outer membrane protein Vir-90 [H]

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MTRFTHRIALLSTAALLGYTTSVTAAETAAEEGPERDYLPAEIVVTGAVGEYAVEDGSTGTKTPTPLIDVPQTVTFITDD
QLEDQSIRQLGEALRYVPGVSLETGEGHRDEIFIRGQETTADFYLDGLRDDAQYYRPLYNVARVEVLKGANALIFGRGGG
GGVVNRVSKTADLGEAFGEFDASADTFGAFALLGDVNAPLSDSAALRVNATYEEFDSHRDFYEGRFIGISPTLTARLGPD
TTLTATYSYDDDSRVVDRGIPSLAGVPLMGFEDTFFGDPDFNRTDAEVHILRSRIEHAFSDQLSVNASVQYADYDKIYQN
IVPGGTDGTTVSLSGYQDAQTRENLIGQANLVWQVETAGVENTFLFGVEAMDQQSTNQRSNVQFAGTNTTPLADVITVPA
FSLGPLGRDRDSSLSTFSAYVQDQLSFGIVEIVAGLRYERFDLETVELLTGVPGSRVDEEVSPRAAIILKPQENLSFYAS
YAESFLPQSGDQFFLLTPTTEAFEPEKFTNYEIGAKWSVKPGLLATASIFRLDRDNTRATDPNNTGLTILTGASRTEGFE
LNVIGDITPNWHTNIGYTYLDGEITSQSTFGAAGQRLQQLPKHQISAWNRFDVTEAFGLGFGVIYQDEQFASFSNNVTLP
DYWRFDAAAYYTVNDRISLQVNIENLFDETYFPSAHGDNNIQPAEPFSARFGVRVKI

Sequences:

>Translated_697_residues
MTRFTHRIALLSTAALLGYTTSVTAAETAAEEGPERDYLPAEIVVTGAVGEYAVEDGSTGTKTPTPLIDVPQTVTFITDD
QLEDQSIRQLGEALRYVPGVSLETGEGHRDEIFIRGQETTADFYLDGLRDDAQYYRPLYNVARVEVLKGANALIFGRGGG
GGVVNRVSKTADLGEAFGEFDASADTFGAFALLGDVNAPLSDSAALRVNATYEEFDSHRDFYEGRFIGISPTLTARLGPD
TTLTATYSYDDDSRVVDRGIPSLAGVPLMGFEDTFFGDPDFNRTDAEVHILRSRIEHAFSDQLSVNASVQYADYDKIYQN
IVPGGTDGTTVSLSGYQDAQTRENLIGQANLVWQVETAGVENTFLFGVEAMDQQSTNQRSNVQFAGTNTTPLADVITVPA
FSLGPLGRDRDSSLSTFSAYVQDQLSFGIVEIVAGLRYERFDLETVELLTGVPGSRVDEEVSPRAAIILKPQENLSFYAS
YAESFLPQSGDQFFLLTPTTEAFEPEKFTNYEIGAKWSVKPGLLATASIFRLDRDNTRATDPNNTGLTILTGASRTEGFE
LNVIGDITPNWHTNIGYTYLDGEITSQSTFGAAGQRLQQLPKHQISAWNRFDVTEAFGLGFGVIYQDEQFASFSNNVTLP
DYWRFDAAAYYTVNDRISLQVNIENLFDETYFPSAHGDNNIQPAEPFSARFGVRVKI
>Mature_696_residues
TRFTHRIALLSTAALLGYTTSVTAAETAAEEGPERDYLPAEIVVTGAVGEYAVEDGSTGTKTPTPLIDVPQTVTFITDDQ
LEDQSIRQLGEALRYVPGVSLETGEGHRDEIFIRGQETTADFYLDGLRDDAQYYRPLYNVARVEVLKGANALIFGRGGGG
GVVNRVSKTADLGEAFGEFDASADTFGAFALLGDVNAPLSDSAALRVNATYEEFDSHRDFYEGRFIGISPTLTARLGPDT
TLTATYSYDDDSRVVDRGIPSLAGVPLMGFEDTFFGDPDFNRTDAEVHILRSRIEHAFSDQLSVNASVQYADYDKIYQNI
VPGGTDGTTVSLSGYQDAQTRENLIGQANLVWQVETAGVENTFLFGVEAMDQQSTNQRSNVQFAGTNTTPLADVITVPAF
SLGPLGRDRDSSLSTFSAYVQDQLSFGIVEIVAGLRYERFDLETVELLTGVPGSRVDEEVSPRAAIILKPQENLSFYASY
AESFLPQSGDQFFLLTPTTEAFEPEKFTNYEIGAKWSVKPGLLATASIFRLDRDNTRATDPNNTGLTILTGASRTEGFEL
NVIGDITPNWHTNIGYTYLDGEITSQSTFGAAGQRLQQLPKHQISAWNRFDVTEAFGLGFGVIYQDEQFASFSNNVTLPD
YWRFDAAAYYTVNDRISLQVNIENLFDETYFPSAHGDNNIQPAEPFSARFGVRVKI

Specific function: Probably involved in iron transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787024, Length=700, Percent_Identity=27.7142857142857, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1786344, Length=734, Percent_Identity=23.9782016348774, Blast_Score=149, Evalue=8e-37,
Organism=Escherichia coli, GI1787344, Length=740, Percent_Identity=23.3783783783784, Blast_Score=138, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76399; Mature: 76268

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFTHRIALLSTAALLGYTTSVTAAETAAEEGPERDYLPAEIVVTGAVGEYAVEDGSTG
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCCC
TKTPTPLIDVPQTVTFITDDQLEDQSIRQLGEALRYVPGVSLETGEGHRDEIFIRGQETT
CCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCC
ADFYLDGLRDDAQYYRPLYNVARVEVLKGANALIFGRGGGGGVVNRVSKTADLGEAFGEF
CCCEECCCCCHHHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
DASADTFGAFALLGDVNAPLSDSAALRVNATYEEFDSHRDFYEGRFIGISPTLTARLGPD
CCCCCHHEEEEEEECCCCCCCCCCEEEEECCHHHHHCCCCHHCCEEEEECCEEEEECCCC
TTLTATYSYDDDSRVVDRGIPSLAGVPLMGFEDTFFGDPDFNRTDAEVHILRSRIEHAFS
CEEEEEEECCCCCHHHHCCCCHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
DQLSVNASVQYADYDKIYQNIVPGGTDGTTVSLSGYQDAQTRENLIGQANLVWQVETAGV
CCEEECEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCEEEEEEEECCC
ENTFLFGVEAMDQQSTNQRSNVQFAGTNTTPLADVITVPAFSLGPLGRDRDSSLSTFSAY
CCEEEEEEHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHH
VQDQLSFGIVEIVAGLRYERFDLETVELLTGVPGSRVDEEVSPRAAIILKPQENLSFYAS
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
YAESFLPQSGDQFFLLTPTTEAFEPEKFTNYEIGAKWSVKPGLLATASIFRLDRDNTRAT
HHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCCEECCCCCCCEEEEEEEECCCCCCCC
DPNNTGLTILTGASRTEGFELNVIGDITPNWHTNIGYTYLDGEITSQSTFGAAGQRLQQL
CCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEECCEECCCCHHHHHHHHHHHH
PKHQISAWNRFDVTEAFGLGFGVIYQDEQFASFSNNVTLPDYWRFDAAAYYTVNDRISLQ
HHHHHCCCCCCCCHHHHCCCEEEEEECCHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEE
VNIENLFDETYFPSAHGDNNIQPAEPFSARFGVRVKI
EEHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
TRFTHRIALLSTAALLGYTTSVTAAETAAEEGPERDYLPAEIVVTGAVGEYAVEDGSTG
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCCC
TKTPTPLIDVPQTVTFITDDQLEDQSIRQLGEALRYVPGVSLETGEGHRDEIFIRGQETT
CCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEECCCCC
ADFYLDGLRDDAQYYRPLYNVARVEVLKGANALIFGRGGGGGVVNRVSKTADLGEAFGEF
CCCEECCCCCHHHHHHHHHHHHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHC
DASADTFGAFALLGDVNAPLSDSAALRVNATYEEFDSHRDFYEGRFIGISPTLTARLGPD
CCCCCHHEEEEEEECCCCCCCCCCEEEEECCHHHHHCCCCHHCCEEEEECCEEEEECCCC
TTLTATYSYDDDSRVVDRGIPSLAGVPLMGFEDTFFGDPDFNRTDAEVHILRSRIEHAFS
CEEEEEEECCCCCHHHHCCCCHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
DQLSVNASVQYADYDKIYQNIVPGGTDGTTVSLSGYQDAQTRENLIGQANLVWQVETAGV
CCEEECEEEEECCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCEEEEEEEECCC
ENTFLFGVEAMDQQSTNQRSNVQFAGTNTTPLADVITVPAFSLGPLGRDRDSSLSTFSAY
CCEEEEEEHHHCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHH
VQDQLSFGIVEIVAGLRYERFDLETVELLTGVPGSRVDEEVSPRAAIILKPQENLSFYAS
HHHHHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHH
YAESFLPQSGDQFFLLTPTTEAFEPEKFTNYEIGAKWSVKPGLLATASIFRLDRDNTRAT
HHHHHCCCCCCEEEEECCCCCCCCCCCCCCEECCCEECCCCCCCEEEEEEEECCCCCCCC
DPNNTGLTILTGASRTEGFELNVIGDITPNWHTNIGYTYLDGEITSQSTFGAAGQRLQQL
CCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCEEEECCEECCCCHHHHHHHHHHHH
PKHQISAWNRFDVTEAFGLGFGVIYQDEQFASFSNNVTLPDYWRFDAAAYYTVNDRISLQ
HHHHHCCCCCCCCHHHHCCCEEEEEECCHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEE
VNIENLFDETYFPSAHGDNNIQPAEPFSARFGVRVKI
EEHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12910271; 10079522 [H]