Click here to switch to the map view.

The map label for this gene is rhaD [H]

Identifier: 85060003

GI number: 85060003

Start: 3488296

End: 3488964

Strand: Reverse

Name: rhaD [H]

Synonym: SG2025

Alternate gene names: 85060003

Gene position: 3488964-3488296 (Counterclockwise)

Preceding gene: 85060011

Following gene: 85059996

Centisome position: 83.65

GC content: 60.54

Gene sequence:

>669_bases
ATGCAATCATTACTTTCTTCCTGGTTCGTACAGGGCATGATCAAAGCGACCAGCGATATGTGGCTCAAAAGCTGGGACGA
GCGCAACGGTGGTAACGTAAGCCTGTGCCTGACACCCGAGGATGTCGCGCCCTACCGGGCGGAATTTAATCCTCAGCCGC
GCAGCGAAACGTTATCCGCGCCGGTGCCGGCGCTGGCCGGCAGCTATTTTCTGGTCACCGGCTCCGGCAAGTTTTTCCGC
AACGTACAGTTCTCGCCCGCCGACAGTTTGACGCTGCTGCAACTCAACGAGGAGGGCACCGGTTACCGTATTCTGTGGGG
GCTTATCGCGGGGGGGGGGGGGGGGGGGATTGCCTACCTCCGAGCTGGCCACGCACCTTCAGTTCCACGCTGTGCGCAAG
CAGGTTACGGACGGCGGCGATCGGGTCATCATGCACTGCCACGCCACCAACCTTATCGCCTTGAGCTGGATACCGCCCGC
TTTACCCGCGAACTGTGGGAAGGTAGTACGGAGTGCCTTGTGGTGTTCCCTGACGGGGTGGGTATTATCCCCTGGATGTT
CCCCGGCACCGACGGAATTGGCGCTGCCACCTCAGAGAAAATGCACGCGCATTCGCTGGTACTGTGGCCTTTCCACGGTA
TTTTCGCCCAGCGGTCCCTCGCTGGATGA

Upstream 100 bases:

>100_bases
CTATTGCCAACAACATCACGTACCGGTTGGCAGCGACTGGTTGTCGTCGGTGCGCGACTATGAACAATCCGTTTTACGTC
AACGCTGAGGATATTTGATT

Downstream 100 bases:

>100_bases
CGCCTTTGGCCTGATCGACACGGCGGAAAAACAGGCGGAGGTTATGGTGAAAGTCAGCGCGATGGGTGGCAAAAAGCAGA
CCATTAGCCGTGCTGAACTC

Product: putative rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQSLLSSWFVQGMIKATSDMWLKSWDERNGGNVSLCLTPEDVAPYRAEFNPQPRSETLSAPVPALAGSYFLVTGSGKFFR
NVQFSPADSLTLLQLNEEGTGYRILWGLIAGGGGGGIAYLRAGHAPSVPRCAQAGYGRRRSGHHALPRHQPYRLELDTAR
FTRELWEGSTECLVVFPDGVGIIPWMFPGTDGIGAATSEKMHAHSLVLWPFHGIFAQRSLAG

Sequences:

>Translated_222_residues
MQSLLSSWFVQGMIKATSDMWLKSWDERNGGNVSLCLTPEDVAPYRAEFNPQPRSETLSAPVPALAGSYFLVTGSGKFFR
NVQFSPADSLTLLQLNEEGTGYRILWGLIAGGGGGGIAYLRAGHAPSVPRCAQAGYGRRRSGHHALPRHQPYRLELDTAR
FTRELWEGSTECLVVFPDGVGIIPWMFPGTDGIGAATSEKMHAHSLVLWPFHGIFAQRSLAG
>Mature_222_residues
MQSLLSSWFVQGMIKATSDMWLKSWDERNGGNVSLCLTPEDVAPYRAEFNPQPRSETLSAPVPALAGSYFLVTGSGKFFR
NVQFSPADSLTLLQLNEEGTGYRILWGLIAGGGGGGIAYLRAGHAPSVPRCAQAGYGRRRSGHHALPRHQPYRLELDTAR
FTRELWEGSTECLVVFPDGVGIIPWMFPGTDGIGAATSEKMHAHSLVLWPFHGIFAQRSLAG

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790336, Length=218, Percent_Identity=55.9633027522936, Blast_Score=239, Evalue=9e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR013447 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =4.1.2.19 [H]

Molecular weight: Translated: 24219; Mature: 24219

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLLSSWFVQGMIKATSDMWLKSWDERNGGNVSLCLTPEDVAPYRAEFNPQPRSETLSA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
PVPALAGSYFLVTGSGKFFRNVQFSPADSLTLLQLNEEGTGYRILWGLIAGGGGGGIAYL
CCCHHCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEE
RAGHAPSVPRCAQAGYGRRRSGHHALPRHQPYRLELDTARFTRELWEGSTECLVVFPDGV
ECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEECCCC
GIIPWMFPGTDGIGAATSEKMHAHSLVLWPFHGIFAQRSLAG
CEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCC
>Mature Secondary Structure
MQSLLSSWFVQGMIKATSDMWLKSWDERNGGNVSLCLTPEDVAPYRAEFNPQPRSETLSA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
PVPALAGSYFLVTGSGKFFRNVQFSPADSLTLLQLNEEGTGYRILWGLIAGGGGGGIAYL
CCCHHCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEE
RAGHAPSVPRCAQAGYGRRRSGHHALPRHQPYRLELDTARFTRELWEGSTECLVVFPDGV
ECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCEEEEECCCC
GIIPWMFPGTDGIGAATSEKMHAHSLVLWPFHGIFAQRSLAG
CEEEEECCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA