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The map label for this gene is skp [H]

Identifier: 85059912

GI number: 85059912

Start: 3337505

End: 3338002

Strand: Reverse

Name: skp [H]

Synonym: SG1934

Alternate gene names: 85059912

Gene position: 3338002-3337505 (Counterclockwise)

Preceding gene: 85059913

Following gene: 85059911

Centisome position: 80.03

GC content: 53.61

Gene sequence:

>498_bases
GTGAAAAAGTGGTTATATGCCACGGGCCTGGGTTTAGCACTCGCCACCTCCACCGTCGCGCAAGCTGCCGATAAAATCGC
TGTGGTTAACGTCTCCAGCATTTTCCAGCAGTCGCCGCAGCGGGCCGTGGTTGCTAAACAGCTCGAAAACGAATTTAAGG
GCCGCGCCACCGAACTTCAGTCCATGGAACGTGACCTACAGACCAAGATGCAGCGTTTGCAGCGTGATGGTTCCACCATG
AAAGCCAGCGAGCGCAGCTCACTGGAGAAATTGGTGATGGCGCAGCGCGAAACCTTCTCCATCAAGGCGCAAGCGTTTGA
TCAGGACAACCGTCGTCGCCAGACGGAAGAACGTAACAAGATTCTGAGCCGCATTCAGGACGCGGTGAAGAGTGTAGCCA
CCAAAGAAGGCTATGACGTAGTGATCGATGCTAACTCCGTGGCTTATGCCACCAACGCTAAAGACATTACCGCTGACGTT
CTGAAGCAGGTTAAATAA

Upstream 100 bases:

>100_bases
GGCATTGACGCAGTACGCAGATGTTACGTGAAAAGCATGTTTTCACCGTTGCCTGGCTTTACATTGAAGCAAAACACAAA
TAGTGATTAAGGAGTTTATA

Downstream 100 bases:

>100_bases
GTCATGTCTTCAATTCGACTGGCTGATTTAGCACAGCAGTTGGATGCACAATTGCACGGTGATGGCGATATTGTCATCAC
CGGCATTGCCTCCATGGGCA

Product: periplasmic chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKKWLYATGLGLALATSTVAQAADKIAVVNVSSIFQQSPQRAVVAKQLENEFKGRATELQSMERDLQTKMQRLQRDGSTM
KASERSSLEKLVMAQRETFSIKAQAFDQDNRRRQTEERNKILSRIQDAVKSVATKEGYDVVIDANSVAYATNAKDITADV
LKQVK

Sequences:

>Translated_165_residues
MKKWLYATGLGLALATSTVAQAADKIAVVNVSSIFQQSPQRAVVAKQLENEFKGRATELQSMERDLQTKMQRLQRDGSTM
KASERSSLEKLVMAQRETFSIKAQAFDQDNRRRQTEERNKILSRIQDAVKSVATKEGYDVVIDANSVAYATNAKDITADV
LKQVK
>Mature_165_residues
MKKWLYATGLGLALATSTVAQAADKIAVVNVSSIFQQSPQRAVVAKQLENEFKGRATELQSMERDLQTKMQRLQRDGSTM
KASERSSLEKLVMAQRETFSIKAQAFDQDNRRRQTEERNKILSRIQDAVKSVATKEGYDVVIDANSVAYATNAKDITADV
LKQVK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=167, Percent_Identity=65.2694610778443, Blast_Score=177, Evalue=4e-46,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18441; Mature: 18441

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLYATGLGLALATSTVAQAADKIAVVNVSSIFQQSPQRAVVAKQLENEFKGRATELQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
SMERDLQTKMQRLQRDGSTMKASERSSLEKLVMAQRETFSIKAQAFDQDNRRRQTEERNK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ILSRIQDAVKSVATKEGYDVVIDANSVAYATNAKDITADVLKQVK
HHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCHHHHHHHHHHCC
>Mature Secondary Structure
MKKWLYATGLGLALATSTVAQAADKIAVVNVSSIFQQSPQRAVVAKQLENEFKGRATELQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHCCCHHHHHHHHHHHHHCCHHHHHH
SMERDLQTKMQRLQRDGSTMKASERSSLEKLVMAQRETFSIKAQAFDQDNRRRQTEERNK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ILSRIQDAVKSVATKEGYDVVIDANSVAYATNAKDITADVLKQVK
HHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA