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The map label for this gene is rnhB

Identifier: 85059907

GI number: 85059907

Start: 3333310

End: 3333906

Strand: Reverse

Name: rnhB

Synonym: SG1929

Alternate gene names: 85059907

Gene position: 3333906-3333310 (Counterclockwise)

Preceding gene: 85059908

Following gene: 85059906

Centisome position: 79.93

GC content: 60.97

Gene sequence:

>597_bases
ATGACGGAATCTTTTATCTATCCTGCGGCGACGCTTATTGCCGGCGTCGATGAAGTGGGGCGCGGACCTTTAGTGGGGGC
GGTGGTGACCGCCGCCGTGATCCTGGATCCCGCCCGGCCGGTATTGGGGCTGGCGGACTCGAAAAAGCTGAGTGAAAAGC
GGCGCGAGGCGCTGTATGAGGAAATAACCCGCTACGCGCTGGCCTGGAGCGTGGGACGCGCCGAAGCCTCTGAGATCGAC
AGTATCAATATTTACCAGGCTACCCTGTTGGCAATGCAGCGGGCGGTCGCGGCTCTGGCGGTGGTACCGGATTTTGTGCT
GGTGGACGGTAATCGCTGCCCGCTGTTACCGATGCCTTCGCAAGCGATAGTGAAAGGCGATAGCCGGGTGGCCGAAATTA
GCGCCGCTTCCATCATTGCCAAAGTCACCCGCGACCGGGAGATGGCCGCGTTGCATCTACAGTTCCCCGAATATGGTTTC
GCCCAGCATAAGGGGTACCCGACCGCCTTCCATCTGGAAAAGCTGGCGCTTCACGGCGCGACCGTGCATCATCGACGAAG
CTTTGCGCCAGTCCGGCGGGTGCTGGAGCTGGCATGA

Upstream 100 bases:

>100_bases
GCCAACTGCACCAACAAATTCGCTGTAACGCCGACGAACAGGCGGCGCGCGCGGTGCTGGCGCTGATTAACCGTTAATTC
TTTTGCAGGTAGTGAAACCC

Downstream 100 bases:

>100_bases
ACCTGTCACCGTCGCGCGGCGCGTGCGTCGCGCCAAAACCTCTTAACGGGTAATGCACATGGCCGAACCACATTTTATTC
ATCTGCGCGTACATAGTGAC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTESFIYPAATLIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSVGRAEASEID
SINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPLLPMPSQAIVKGDSRVAEISAASIIAKVTRDREMAALHLQFPEYGF
AQHKGYPTAFHLEKLALHGATVHHRRSFAPVRRVLELA

Sequences:

>Translated_198_residues
MTESFIYPAATLIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSVGRAEASEID
SINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPLLPMPSQAIVKGDSRVAEISAASIIAKVTRDREMAALHLQFPEYGF
AQHKGYPTAFHLEKLALHGATVHHRRSFAPVRRVLELA
>Mature_197_residues
TESFIYPAATLIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYEEITRYALAWSVGRAEASEIDS
INIYQATLLAMQRAVAALAVVPDFVLVDGNRCPLLPMPSQAIVKGDSRVAEISAASIIAKVTRDREMAALHLQFPEYGFA
QHKGYPTAFHLEKLALHGATVHHRRSFAPVRRVLELA

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=194, Percent_Identity=76.8041237113402, Blast_Score=308, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_SODGM (Q2NRM1)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455609.1
- ProteinModelPortal:   Q2NRM1
- SMR:   Q2NRM1
- STRING:   Q2NRM1
- GeneID:   3867841
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG1929
- NMPDR:   fig|343509.6.peg.4183
- eggNOG:   COG0164
- HOGENOM:   HBG584843
- OMA:   RLGPTPI
- PhylomeDB:   Q2NRM1
- ProtClustDB:   PRK00015
- BioCyc:   SGLO343509:SG1929-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 21467; Mature: 21336

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESFIYPAATLIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYE
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHH
EITRYALAWSVGRAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPLLPMPS
HHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC
QAIVKGDSRVAEISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGA
HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHCCCCCCHHHHHHHHHCCC
TVHHRRSFAPVRRVLELA
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TESFIYPAATLIAGVDEVGRGPLVGAVVTAAVILDPARPVLGLADSKKLSEKRREALYE
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHH
EITRYALAWSVGRAEASEIDSINIYQATLLAMQRAVAALAVVPDFVLVDGNRCPLLPMPS
HHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCC
QAIVKGDSRVAEISAASIIAKVTRDREMAALHLQFPEYGFAQHKGYPTAFHLEKLALHGA
HHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHCCCCCCHHHHHHHHHCCC
TVHHRRSFAPVRRVLELA
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA