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The map label for this gene is sirB1 [H]

Identifier: 85059852

GI number: 85059852

Start: 3209858

End: 3210667

Strand: Reverse

Name: sirB1 [H]

Synonym: SG1874

Alternate gene names: 85059852

Gene position: 3210667-3209858 (Counterclockwise)

Preceding gene: 85059853

Following gene: 85059851

Centisome position: 76.97

GC content: 57.04

Gene sequence:

>810_bases
ATGAGTACGATTGCCGATTTTGAATATAACCAGCATCCTTTAAGCGAGGGGATGCTGCGCGTAACCCAGGCCATCCGGCC
CGATTTTGCCATCGAAAGCGTCCGCGCCCGGTTACAAAGCCTGACGGAAGAAGCACGGCGCCGTATTCCCGCCGACCTGG
CGCAGGATGATCAGCTCGACCTGCTGATCGAGCTCTTTTACCGCACCTGGGGCTTTGGCGGCGTCGGCGGCGTTTACCGT
CTGTCCGATGCACTGTGGCTGGATACGGTATTGGACCGCCGTCAGGGGCTGCCCGCGTCACTGGGGATTATTTTGCTGCA
TATCGCCCAGGCACTGGGGATCCCCTTGATGCCGGTAATTTTCCCGACGCAGATGATCCTGCGCGCCGACTGGCTGGACG
GCGAGATGTGGCTGATGAATCCCATCAATGGCGACCCGCTGGATGCGCATACGCTGGATATCTGGCTGCGGGGTAATCTC
GGCGAGGGGGTGCAGCTTGCTGAAGAAGATTTGGAAGAGGCGGATAATAATACCGTGGTGCGCAAATTGCTCGATACCCT
GAAAGGGGCGCTGATGGACGAAAAGCAAATGGAGCTGGCGTTGCGCGCCAGCGAGGCTATGCTGGAATTTGACCCGGCGG
ATCCCTACGAAATCCGCGATCGCGGCCTGATTTATGTCGAGCTGGAGTGCGACCACGTGGCGCTCAACGACTTAAATTAC
TTTGTCGAGCAATGTCCGGAAGATCCGGGCAGCGAGATGATTAAGGTTCAGATTCACTCCATCGAGCAAAAATCGGTTAC
CCTACATTGA

Upstream 100 bases:

>100_bases
CCGGACCATGTTTACCGCCGCTTGTTCCCGGGTGCCATTTGTTTGTCACGCCGGCTGCATCGCCGGCGCTTATCAGACTC
ACCCTGTTAACAGGACCATT

Downstream 100 bases:

>100_bases
TCGGCGGCGGTGTTTGCCACCGGTTGCCGGACAATTTTAATCAAAAAGGTGAAGCATGAAACATTTGGTGGTCAATATTG
GCGACATCCAGGCAGCGAAC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSTIADFEYNQHPLSEGMLRVTQAIRPDFAIESVRARLQSLTEEARRRIPADLAQDDQLDLLIELFYRTWGFGGVGGVYR
LSDALWLDTVLDRRQGLPASLGIILLHIAQALGIPLMPVIFPTQMILRADWLDGEMWLMNPINGDPLDAHTLDIWLRGNL
GEGVQLAEEDLEEADNNTVVRKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNY
FVEQCPEDPGSEMIKVQIHSIEQKSVTLH

Sequences:

>Translated_269_residues
MSTIADFEYNQHPLSEGMLRVTQAIRPDFAIESVRARLQSLTEEARRRIPADLAQDDQLDLLIELFYRTWGFGGVGGVYR
LSDALWLDTVLDRRQGLPASLGIILLHIAQALGIPLMPVIFPTQMILRADWLDGEMWLMNPINGDPLDAHTLDIWLRGNL
GEGVQLAEEDLEEADNNTVVRKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNY
FVEQCPEDPGSEMIKVQIHSIEQKSVTLH
>Mature_268_residues
STIADFEYNQHPLSEGMLRVTQAIRPDFAIESVRARLQSLTEEARRRIPADLAQDDQLDLLIELFYRTWGFGGVGGVYRL
SDALWLDTVLDRRQGLPASLGIILLHIAQALGIPLMPVIFPTQMILRADWLDGEMWLMNPINGDPLDAHTLDIWLRGNLG
EGVQLAEEDLEEADNNTVVRKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNYF
VEQCPEDPGSEMIKVQIHSIEQKSVTLH

Specific function: Not essential for the expression of the invasive phenotype. Required for maximal expression of sirC [H]

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=269, Percent_Identity=59.1078066914498, Blast_Score=329, Evalue=1e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30464; Mature: 30333

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIADFEYNQHPLSEGMLRVTQAIRPDFAIESVRARLQSLTEEARRRIPADLAQDDQLD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LLIELFYRTWGFGGVGGVYRLSDALWLDTVLDRRQGLPASLGIILLHIAQALGIPLMPVI
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
FPTQMILRADWLDGEMWLMNPINGDPLDAHTLDIWLRGNLGEGVQLAEEDLEEADNNTVV
HHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCHHHH
RKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNY
HHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCEECCCCEEEEEEECCEEEHHHHHH
FVEQCPEDPGSEMIKVQIHSIEQKSVTLH
HHHHCCCCCCCCEEEEEEEECCCCCEECC
>Mature Secondary Structure 
STIADFEYNQHPLSEGMLRVTQAIRPDFAIESVRARLQSLTEEARRRIPADLAQDDQLD
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LLIELFYRTWGFGGVGGVYRLSDALWLDTVLDRRQGLPASLGIILLHIAQALGIPLMPVI
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH
FPTQMILRADWLDGEMWLMNPINGDPLDAHTLDIWLRGNLGEGVQLAEEDLEEADNNTVV
HHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCHHHH
RKLLDTLKGALMDEKQMELALRASEAMLEFDPADPYEIRDRGLIYVELECDHVALNDLNY
HHHHHHHHHHHCCHHHHHHHHHHHHHHEECCCCCCCEECCCCEEEEEEECCEEEHHHHHH
FVEQCPEDPGSEMIKVQIHSIEQKSVTLH
HHHHCCCCCCCCEEEEEEEECCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]