Click here to switch to the map view.

The map label for this gene is arrD [H]

Identifier: 85059537

GI number: 85059537

Start: 2660232

End: 2660717

Strand: Reverse

Name: arrD [H]

Synonym: SG1559

Alternate gene names: 85059537

Gene position: 2660717-2660232 (Counterclockwise)

Preceding gene: 85059538

Following gene: 85059536

Centisome position: 63.79

GC content: 52.06

Gene sequence:

>486_bases
ATGAATCCCGAGCTGCGTAACCGATTGATAAAAGGCACAGCAGGCGGTGTTATTGCATTAGCGACCGTGCTAATTCAATG
GCACGAGAGCGTACACTACACTCCCTATCGGGATTCTGGCGGCGTATTGTCGGTCTGTTATGGACATACCGGTAGCGATA
TTGTCCCCGGTAAGCGCTATACCGTTGCTGAATGTCAAGCCCTGCTAGATAGCGACCTGAAAGCCGCAATGTCCGTCGTT
GACGCCAATGTTACCGTACCACTGACTGAGAGCCAAAGAGCGGCGTTAGCCTCGTTCGTCTACAACGTGGGGAACGGGGC
GTTTGCGCGCTCTACGCTACTGAAAAAGCTGAACGCCGGAGACATGGCCGGTGCCTGTGATGAGATGCGGCGCTGGAAAT
ATGTTGGCGGCAAAGTATCGAAGGGACTGGTCAATCGGCGGGCAATAGAGCAAGAGTTGTTGTGTAAGGTAATGATAAAT
ATTTAA

Upstream 100 bases:

>100_bases
AATGGGCATTGATTACCGGTATCGCATGCACCTTGGCCACCTTTTTGCTGAACTGGATTTACCGGCATAAGGAATACCGT
TTCAGGACGAAACGCGACCC

Downstream 100 bases:

>100_bases
TCATTGTATTGATTTTTATAATCAAACATACTTAACGTGTTTTAATATGCATCCGGTTATCCAGCAGAAAGCACGGGCAG
CAAGTCTCTTCCGTGATCTT

Product: phage lysozyme lysis protein

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MNPELRNRLIKGTAGGVIALATVLIQWHESVHYTPYRDSGGVLSVCYGHTGSDIVPGKRYTVAECQALLDSDLKAAMSVV
DANVTVPLTESQRAALASFVYNVGNGAFARSTLLKKLNAGDMAGACDEMRRWKYVGGKVSKGLVNRRAIEQELLCKVMIN
I

Sequences:

>Translated_161_residues
MNPELRNRLIKGTAGGVIALATVLIQWHESVHYTPYRDSGGVLSVCYGHTGSDIVPGKRYTVAECQALLDSDLKAAMSVV
DANVTVPLTESQRAALASFVYNVGNGAFARSTLLKKLNAGDMAGACDEMRRWKYVGGKVSKGLVNRRAIEQELLCKVMIN
I
>Mature_161_residues
MNPELRNRLIKGTAGGVIALATVLIQWHESVHYTPYRDSGGVLSVCYGHTGSDIVPGKRYTVAECQALLDSDLKAAMSVV
DANVTVPLTESQRAALASFVYNVGNGAFARSTLLKKLNAGDMAGACDEMRRWKYVGGKVSKGLVNRRAIEQELLCKVMIN
I

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=125, Percent_Identity=55.2, Blast_Score=147, Evalue=3e-37,
Organism=Escherichia coli, GI1787836, Length=139, Percent_Identity=36.6906474820144, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 17414; Mature: 17414

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPELRNRLIKGTAGGVIALATVLIQWHESVHYTPYRDSGGVLSVCYGHTGSDIVPGKRY
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
TVAECQALLDSDLKAAMSVVDANVTVPLTESQRAALASFVYNVGNGAFARSTLLKKLNAG
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
DMAGACDEMRRWKYVGGKVSKGLVNRRAIEQELLCKVMINI
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNPELRNRLIKGTAGGVIALATVLIQWHESVHYTPYRDSGGVLSVCYGHTGSDIVPGKRY
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
TVAECQALLDSDLKAAMSVVDANVTVPLTESQRAALASFVYNVGNGAFARSTLLKKLNAG
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
DMAGACDEMRRWKYVGGKVSKGLVNRRAIEQELLCKVMINI
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]