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The map label for this gene is ybeY [C]

Identifier: 85058787

GI number: 85058787

Start: 1365734

End: 1366204

Strand: Reverse

Name: ybeY [C]

Synonym: SG0809

Alternate gene names: 85058787

Gene position: 1366204-1365734 (Counterclockwise)

Preceding gene: 85058788

Following gene: 85058786

Centisome position: 32.75

GC content: 56.9

Gene sequence:

>471_bases
ATGAGCGACGTGATACTTGACCTGCAGCTGGCCTGCGATGAAGCGCGTGGTTTGCCCGCCGAGGCGGATTTCCTGCGCTG
GCTGCAGGGCGTGCTGCCGCTGTTTCGCGACTGCGCGGAGGTGACCGTTCGCCTGGTGGACGAAGCGGAAAGCCATGAAC
TTAATATGACCTACCGCGGCAAAGATCGGCCCACCAATGTGCTTTCCTTTCCCTTTGAGGCGCCACCGGAAGTGGAACTG
CCGCTACTGGGGGATTTGGTAATCTGCCATCAGGTAGTGGAGCGCGAAGCGCAGCAGCAGGAGAAGGCGCTGGAAGCCCA
TTGGGCGCATATGGTTGTTCACGGTTCACTGCATCTGTTAGGGTATGATCATATACAGGATGAGGAAGCCCTGGAGATGG
AATCGCTGGAAACCGAGATTATGCAAAAGCTCGGTTACCCGGATCCGTATCTTGCGGAAAAAGAGGCGTAA

Upstream 100 bases:

>100_bases
AAGAACAACTCGCCGCCGAGCGCAAACACGAGGCCTTGGCACAGAACAACGGCGCCGCTCTGGCCGGCCACGGTTCGTCA
TCCTCCAGGGAGTCTGATGC

Downstream 100 bases:

>100_bases
TGCCCCCCATAATCATTAGAGAGTGAAACTGACTAAACGCTATGAGCGACGACCATTCGCAGAGCAACGATAGCCCCAGT
CCCAAGAAGGGCTTTTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSDVILDLQLACDEARGLPAEADFLRWLQGVLPLFRDCAEVTVRLVDEAESHELNMTYRGKDRPTNVLSFPFEAPPEVEL
PLLGDLVICHQVVEREAQQQEKALEAHWAHMVVHGSLHLLGYDHIQDEEALEMESLETEIMQKLGYPDPYLAEKEA

Sequences:

>Translated_156_residues
MSDVILDLQLACDEARGLPAEADFLRWLQGVLPLFRDCAEVTVRLVDEAESHELNMTYRGKDRPTNVLSFPFEAPPEVEL
PLLGDLVICHQVVEREAQQQEKALEAHWAHMVVHGSLHLLGYDHIQDEEALEMESLETEIMQKLGYPDPYLAEKEA
>Mature_155_residues
SDVILDLQLACDEARGLPAEADFLRWLQGVLPLFRDCAEVTVRLVDEAESHELNMTYRGKDRPTNVLSFPFEAPPEVELP
LLGDLVICHQVVEREAQQQEKALEAHWAHMVVHGSLHLLGYDHIQDEEALEMESLETEIMQKLGYPDPYLAEKEA

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=155, Percent_Identity=72.9032258064516, Blast_Score=224, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_SODGM (Q2NUU1)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_454489.1
- ProteinModelPortal:   Q2NUU1
- SMR:   Q2NUU1
- STRING:   Q2NUU1
- GeneID:   3868018
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG0809
- NMPDR:   fig|343509.6.peg.1737
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- PhylomeDB:   Q2NUU1
- ProtClustDB:   CLSK2503931
- BioCyc:   SGLO343509:SG0809-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17747; Mature: 17616

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDVILDLQLACDEARGLPAEADFLRWLQGVLPLFRDCAEVTVRLVDEAESHELNMTYRG
CCCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECEEECC
KDRPTNVLSFPFEAPPEVELPLLGDLVICHQVVEREAQQQEKALEAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
GYDHIQDEEALEMESLETEIMQKLGYPDPYLAEKEA
ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SDVILDLQLACDEARGLPAEADFLRWLQGVLPLFRDCAEVTVRLVDEAESHELNMTYRG
CCEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECEEECC
KDRPTNVLSFPFEAPPEVELPLLGDLVICHQVVEREAQQQEKALEAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
GYDHIQDEEALEMESLETEIMQKLGYPDPYLAEKEA
ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA